JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IQCA1L_chr7_151185873_151210496	0/0	a0013	818	10	5	4	0	1	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0014	461	7	4	1	0	2	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0015	818	6	0	3	0	3	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0016	461	6	0	2	1	0	3	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0017	818	4	0	1	2	1	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0018	461	4	0	0	4	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0019	818	4	0	0	4	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0020	818	3	0	0	3	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0021	818	2	0	2	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0022	818	2	0	2	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0023	818	2	2	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0024	818	2	2	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0025	818	2	2	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0026	818	2	2	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0027	818	2	2	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0028	461	2	2	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0029	818	2	0	0	2	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0030	23	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0031	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0032	818	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0033	461	1	0	0	0	1	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0034	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0035	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0036	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0037	461	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0038	818	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0039	818	1	0	0	0	0	1	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0040	818	1	0	1	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0041	818	1	0	1	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0042	818	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0043	818	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0044	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0045	461	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0046	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0047	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0048	818	1	0	0	1	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0049	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0050	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0051	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0052	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0053	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0054	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0055	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0056	818	1	0	0	0	0	1	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0057	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0058	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0059	818	1	0	1	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0060	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0061	818	1	1	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1_chr2_236319151_236512476	1/1	a0001	822	154	57	38	33	6	18	copy fasta	IQCA1	chr2	236319151	236512476