JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IQCA1_chr2_236319151_236512476	0/0	a0002	822	22	18	4	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	a0003	822	20	0	0	20	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	a0004	822	2	1	1	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	a0005	822	2	0	0	2	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	a0006	822	2	2	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	a0007	822	1	1	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	a0008	822	1	1	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	a0009	822	1	0	0	1	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	a0010	822	1	0	1	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	a0011	822	1	1	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCA1_chr2_236319151_236512476	0/0	a0012	822	1	1	0	0	0	0	copy fasta	IQCA1	chr2	236319151	236512476
IQCB1_chr3_121764761_121840060	1/0	a0001	598	215	62	40	87	8	17	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	a0002	598	74	15	21	21	4	13	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/1	a0003	598	12	3	4	0	2	2	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	a0004	598	3	0	0	3	0	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	a0005	598	2	2	0	0	0	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	a0006	598	1	0	1	0	0	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCB1_chr3_121764761_121840060	0/0	a0007	568	1	0	0	1	0	0	copy fasta	IQCB1	chr3	121764761	121840060
IQCC_chr1_32200671_32213682	1/0	a0001	466	241	64	41	94	9	32	copy fasta	IQCC	chr1	32200671	32213682
IQCC_chr1_32200671_32213682	0/0	a0002	466	98	25	20	43	1	9	copy fasta	IQCC	chr1	32200671	32213682
IQCC_chr1_32200671_32213682	0/1	a0003	466	68	1	6	53	3	4	copy fasta	IQCC	chr1	32200671	32213682
IQCC_chr1_32200671_32213682	0/0	a0004	466	1	0	0	0	0	1	copy fasta	IQCC	chr1	32200671	32213682
IQCC_chr1_32200671_32213682	0/0	a0005	466	1	1	0	0	0	0	copy fasta	IQCC	chr1	32200671	32213682
IQCC_chr1_32200671_32213682	0/0	a0006	466	1	0	1	0	0	0	copy fasta	IQCC	chr1	32200671	32213682
IQCC_chr1_32200671_32213682	0/0	a0007	466	1	0	0	0	1	0	copy fasta	IQCC	chr1	32200671	32213682
IQCC_chr1_32200671_32213682	0/0	a0008	466	1	1	0	0	0	0	copy fasta	IQCC	chr1	32200671	32213682
IQCD_chr12_113190446_113226094	1/1	a0001	449	285	81	50	111	10	31	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	a0002	449	40	2	0	37	0	1	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	a0003	449	4	4	0	0	0	0	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	a0004	449	2	0	0	0	0	2	copy fasta	IQCD	chr12	113190446	113226094
IQCD_chr12_113190446_113226094	0/0	a0005	449	1	1	0	0	0	0	copy fasta	IQCD	chr12	113190446	113226094
IQCE_chr7_2553979_2619728	1/0	a0001	695	175	39	33	70	9	23	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0002	695	129	8	16	92	4	9	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/1	a0003	695	34	4	14	12	1	2	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0004	695	11	11	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0005	695	10	0	7	0	2	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0006	695	10	8	2	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0007	695	10	10	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0008	695	10	7	3	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0009	695	4	4	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0010	695	2	0	1	0	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0011	695	2	0	0	0	0	2	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0012	695	2	0	0	2	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0013	695	2	0	2	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0014	695	2	2	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0015	695	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0016	695	1	0	1	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0017	695	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0018	695	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0019	695	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728