JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IQCE_chr7_2553979_2619728	0/0	a0020	695	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0021	695	1	0	0	0	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0022	695	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0023	674	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0024	695	1	0	0	1	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0025	695	1	0	1	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0026	695	1	1	0	0	0	0	copy fasta	IQCE	chr7	2553979	2619728
IQCE_chr7_2553979_2619728	0/0	a0027	695	1	0	0	0	0	1	copy fasta	IQCE	chr7	2553979	2619728
IQCF1_chr3_51889876_51908353	1/1	a0001	205	322	86	54	140	12	28	copy fasta	IQCF1	chr3	51889876	51908353
IQCF1_chr3_51889876_51908353	0/0	a0002	205	24	5	8	3	5	3	copy fasta	IQCF1	chr3	51889876	51908353
IQCF1_chr3_51889876_51908353	0/0	a0003	205	5	2	0	0	0	3	copy fasta	IQCF1	chr3	51889876	51908353
IQCF1_chr3_51889876_51908353	0/0	a0004	205	3	0	0	3	0	0	copy fasta	IQCF1	chr3	51889876	51908353
IQCF1_chr3_51889876_51908353	0/0	a0005	205	1	0	0	0	1	0	copy fasta	IQCF1	chr3	51889876	51908353
IQCF1_chr3_51889876_51908353	0/0	a0006	205	1	0	0	0	0	1	copy fasta	IQCF1	chr3	51889876	51908353
IQCF1_chr3_51889876_51908353	0/0	a0007	205	1	0	0	0	0	1	copy fasta	IQCF1	chr3	51889876	51908353
IQCF1_chr3_51889876_51908353	0/0	a0008	205	1	1	0	0	0	0	copy fasta	IQCF1	chr3	51889876	51908353
IQCF2_chr3_51856615_51868424	1/1	a0001	164	412	86	75	196	18	35	copy fasta	IQCF2	chr3	51856615	51868424
IQCF2_chr3_51856615_51868424	0/0	a0002	164	5	5	0	0	0	0	copy fasta	IQCF2	chr3	51856615	51868424
IQCF2_chr3_51856615_51868424	0/0	a0003	164	5	1	0	0	0	4	copy fasta	IQCF2	chr3	51856615	51868424
IQCF2_chr3_51856615_51868424	0/0	a0004	164	2	0	1	0	0	1	copy fasta	IQCF2	chr3	51856615	51868424
IQCF2_chr3_51856615_51868424	0/0	a0005	117	1	0	0	0	0	1	copy fasta	IQCF2	chr3	51856615	51868424
IQCF2_chr3_51856615_51868424	0/0	a0006	164	1	0	0	0	0	1	copy fasta	IQCF2	chr3	51856615	51868424
IQCF3_chr3_51824426_51835856	1/1	a0001	154	335	88	66	130	16	33	copy fasta	IQCF3	chr3	51824426	51835856
IQCF3_chr3_51824426_51835856	0/0	a0002	154	3	0	0	0	0	3	copy fasta	IQCF3	chr3	51824426	51835856
IQCF3_chr3_51824426_51835856	0/0	a0003	154	2	2	0	0	0	0	copy fasta	IQCF3	chr3	51824426	51835856
IQCF5_chr3_51868721_51880601	1/1	a0001	148	372	94	64	158	18	36	copy fasta	IQCF5	chr3	51868721	51880601
IQCF5_chr3_51868721_51880601	0/0	a0002	148	3	0	0	3	0	0	copy fasta	IQCF5	chr3	51868721	51880601
IQCF5_chr3_51868721_51880601	0/0	a0003	148	1	0	0	1	0	0	copy fasta	IQCF5	chr3	51868721	51880601
IQCF5_chr3_51868721_51880601	0/0	a0004	148	1	1	0	0	0	0	copy fasta	IQCF5	chr3	51868721	51880601
IQCF5_chr3_51868721_51880601	0/0	a0005	148	1	1	0	0	0	0	copy fasta	IQCF5	chr3	51868721	51880601
IQCF6_chr3_51773563_51784237	1/1	a0001	146	348	78	54	168	11	35	copy fasta	IQCF6	chr3	51773563	51784237
IQCF6_chr3_51773563_51784237	0/0	a0002	146	41	1	14	14	5	7	copy fasta	IQCF6	chr3	51773563	51784237
IQCF6_chr3_51773563_51784237	0/0	a0003	146	19	10	2	7	0	0	copy fasta	IQCF6	chr3	51773563	51784237
IQCF6_chr3_51773563_51784237	0/0	a0004	146	7	0	0	7	0	0	copy fasta	IQCF6	chr3	51773563	51784237
IQCF6_chr3_51773563_51784237	0/0	a0005	146	2	2	0	0	0	0	copy fasta	IQCF6	chr3	51773563	51784237
IQCF6_chr3_51773563_51784237	0/0	a0006	92	1	1	0	0	0	0	copy fasta	IQCF6	chr3	51773563	51784237
IQCG_chr3_197884077_197964991	1/1	a0001	443	168	43	37	58	7	21	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	a0002	443	95	37	17	25	3	13	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	a0003	443	12	0	6	6	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	a0004	443	1	1	0	0	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	a0005	443	1	1	0	0	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	a0006	443	1	0	0	1	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	a0007	443	1	0	1	0	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCG_chr3_197884077_197964991	0/0	a0008	443	1	0	1	0	0	0	copy fasta	IQCG	chr3	197884077	197964991
IQCH_chr15_67249786_67506804	0/1	a0001	1027	269	78	35	127	10	18	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	0/0	a0002	1027	2	0	0	0	0	2	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	0/0	a0003	1027	2	2	0	0	0	0	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	1/0	a0004	1027	1	0	0	0	0	0	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	0/0	a0005	222	1	0	1	0	0	0	copy fasta	IQCH	chr15	67249786	67506804
IQCH_chr15_67249786_67506804	0/0	a0006	138	1	0	0	1	0	0	copy fasta	IQCH	chr15	67249786	67506804