JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IQCJ_chr3_159064319_159268747	1/1	a0001	112	250	76	44	94	10	24	copy fasta	IQCJ	chr3	159064319	159268747
IQCJ_chr3_159064319_159268747	0/0	a0002	112	1	1	0	0	0	0	copy fasta	IQCJ	chr3	159064319	159268747
IQCJ_chr3_159064319_159268747	0/0	a0003	112	1	1	0	0	0	0	copy fasta	IQCJ	chr3	159064319	159268747
IQCK_chr16_19713271_19863467	1/1	a0001	287	185	83	36	39	8	17	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	a0002	287	58	6	6	33	2	11	copy fasta	IQCK	chr16	19713271	19863467
IQCK_chr16_19713271_19863467	0/0	a0003	287	1	1	0	0	0	0	copy fasta	IQCK	chr16	19713271	19863467
IQCM_chr4_149346709_149820843	1/1	a0001	501	222	54	23	105	6	32	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	a0002	501	10	10	0	0	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	a0003	113	6	4	1	0	0	1	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	a0004	340	3	3	0	0	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	a0005	471	2	0	0	2	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	a0006	501	2	0	0	2	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	a0007	501	2	2	0	0	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	a0008	501	1	1	0	0	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	a0009	501	1	0	1	0	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	a0010	501	1	0	0	0	0	1	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	a0011	501	1	0	0	1	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCM_chr4_149346709_149820843	0/0	a0012	501	1	0	1	0	0	0	copy fasta	IQCM	chr4	149346709	149820843
IQCN_chr19_18252098_18279452	1/1	a0001	1367	150	17	29	74	6	22	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0002	1367	102	11	26	56	5	4	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0003	1367	69	0	9	48	1	11	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0004	1367	41	29	8	2	1	1	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0005	1367	10	0	0	10	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0006	1367	6	5	1	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0007	1367	4	0	2	0	1	1	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0008	1367	4	3	1	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0009	1367	3	3	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0010	1367	3	0	0	0	0	3	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0011	1367	3	3	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0012	1367	3	3	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0013	1367	2	2	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0014	1367	2	2	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0015	1367	2	0	0	2	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0016	1367	2	2	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0017	1367	2	2	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0018	1367	2	0	0	0	2	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0019	1367	2	0	0	0	0	2	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0020	16	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0021	1367	1	0	0	0	0	1	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0022	1367	1	0	1	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0023	1367	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0024	1367	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0025	1367	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0026	1367	1	0	0	0	0	1	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0027	1367	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0028	1367	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0029	1367	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0030	1367	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0031	1367	1	0	1	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0032	1367	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452