JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IQGAP3_chr1_156520405_156577565	0/0	a0003	1631	53	28	9	5	2	9	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0004	1631	11	11	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0005	1631	8	4	1	0	0	3	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0006	1631	7	0	1	6	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0007	1631	5	5	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0008	1631	5	5	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0009	1631	5	5	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	1/0	a0010	1631	4	3	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0011	1631	3	0	0	3	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0012	1631	3	0	1	0	2	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0013	1631	2	0	0	2	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0014	1631	1	1	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0015	1631	1	0	0	1	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0016	1631	1	0	1	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0017	1631	1	0	1	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0018	1631	1	0	0	1	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0019	1631	1	1	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0020	1631	1	1	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0021	1631	1	0	1	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0022	1631	1	1	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0023	1631	1	1	0	0	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/0	a0024	1631	1	0	0	1	0	0	copy fasta	IQGAP3	chr1	156520405	156577565
IQSEC1_chr3_12892043_13078429	0/0	a0000	0	17	4	4	7	0	2	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	1/1	a0001	1114	187	56	33	53	10	33	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	a0002	1113	14	13	1	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	a0003	1114	13	0	2	10	0	1	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	a0004	1114	3	3	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	a0005	1114	3	3	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	a0006	1114	2	2	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	a0007	1114	2	0	2	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	a0008	1114	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	a0009	1114	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	a0010	1114	1	1	0	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	a0011	1114	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	a0012	1114	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	a0013	1114	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	a0014	1114	1	0	1	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	a0015	1114	1	0	0	1	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC1_chr3_12892043_13078429	0/0	a0016	1114	1	0	1	0	0	0	copy fasta	IQSEC1	chr3	12892043	13078429
IQSEC2_chrX_53227876_53326350	1/1	a0001	1488	209	69	30	87	5	16	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	a0002	1385	2	0	0	2	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	a0003	1488	1	1	0	0	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53227876_53326350	0/0	a0004	1488	1	0	0	1	0	0	copy fasta	IQSEC2	chrX	53227876	53326350
IQSEC2_chrX_53261328_53286584	1/1	a0001	73	299	78	47	133	7	32	copy fasta	IQSEC2	chrX	53261328	53286584
IQSEC3_chr12_61767_183455	0/1	a0001	1182	125	21	23	59	7	14	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0002	1182	69	29	11	16	3	10	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0003	1182	27	18	6	2	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0004	1182	13	3	1	8	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0005	1182	7	7	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	1/0	a0006	1182	6	5	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455