JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IQSEC3_chr12_61767_183455	0/0	a0007	1182	5	0	2	0	1	2	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0008	951	4	3	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0009	1182	3	0	3	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0010	1183	3	0	0	3	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0011	1182	2	0	1	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0012	1182	2	0	1	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0013	1182	2	0	1	0	1	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0014	1182	2	0	2	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0015	1182	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0016	951	1	0	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0017	1182	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0018	1182	1	0	1	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0019	1182	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0020	1181	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0021	1182	1	0	0	0	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0022	951	1	0	0	0	1	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0023	951	1	0	0	0	1	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0024	1182	1	1	0	0	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0025	1182	1	0	0	1	0	0	copy fasta	IQSEC3	chr12	61767	183455
IQSEC3_chr12_61767_183455	0/0	a0026	1182	1	0	0	0	0	1	copy fasta	IQSEC3	chr12	61767	183455
IQUB_chr7_123447193_123539595	1/1	a0001	791	233	54	35	96	11	35	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	a0002	791	107	19	16	60	4	8	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	a0003	791	16	15	1	0	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	a0004	791	4	4	0	0	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	a0005	791	3	0	0	3	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	a0006	791	2	2	0	0	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	a0007	791	1	0	1	0	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	a0008	791	1	0	0	1	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	a0009	791	1	0	0	0	0	1	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	a0010	791	1	0	1	0	0	0	copy fasta	IQUB	chr7	123447193	123539595
IQUB_chr7_123447193_123539595	0/0	a0011	791	1	0	0	0	1	0	copy fasta	IQUB	chr7	123447193	123539595
IRAG1_chr11_10568095_10698755	0/1	a0001	912	142	32	40	41	9	19	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0002	912	68	21	12	25	4	6	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0003	912	17	2	8	0	3	4	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0004	912	11	11	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0005	912	5	5	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0006	912	5	0	2	2	0	1	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	1/0	a0007	912	3	2	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0008	912	3	3	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0009	912	2	2	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0010	912	2	2	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0011	912	2	2	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0012	912	2	1	1	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0013	912	2	2	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0014	912	1	0	1	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0015	912	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0016	912	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0017	912	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0018	912	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0019	912	1	0	0	1	0	0	copy fasta	IRAG1	chr11	10568095	10698755