JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IRAG1_chr11_10568095_10698755	0/0	a0020	912	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0021	912	1	0	0	1	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0022	912	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0023	912	1	0	0	0	0	1	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0024	912	1	0	0	1	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0025	912	1	1	0	0	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0026	912	1	0	0	1	0	0	copy fasta	IRAG1	chr11	10568095	10698755
IRAG1_chr11_10568095_10698755	0/0	a0027	912	1	0	0	0	0	1	copy fasta	IRAG1	chr11	10568095	10698755
IRAG2_chr12_25047706_25113335	0/1	a0001	499	145	9	33	78	7	17	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	a0002	499	100	41	31	19	0	9	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	1/0	a0003	499	55	18	13	14	5	4	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	a0004	499	24	4	9	0	2	9	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	a0005	499	8	8	0	0	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	a0006	499	8	8	0	0	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	a0007	499	2	2	0	0	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	a0008	499	1	0	0	1	0	0	copy fasta	IRAG2	chr12	25047706	25113335
IRAG2_chr12_25047706_25113335	0/0	a0009	499	1	0	0	0	0	1	copy fasta	IRAG2	chr12	25047706	25113335
IRAK1BP1_chr6_78862551_78908102	1/1	a0001	260	340	93	56	138	11	40	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	a0002	260	3	0	0	3	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	a0003	260	1	0	0	1	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	a0004	260	1	1	0	0	0	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1BP1_chr6_78862551_78908102	0/0	a0005	260	1	0	0	0	1	0	copy fasta	IRAK1BP1	chr6	78862551	78908102
IRAK1_chrX_154005507_154024902	0/0	a0001	712	122	8	18	83	0	13	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	a0002	712	108	29	22	36	9	12	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	a0003	712	29	23	5	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	a0004	712	5	4	1	0	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	a0005	712	4	4	0	0	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	a0006	712	3	3	0	0	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	a0007	712	2	0	2	0	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	a0008	712	1	0	0	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	a0009	712	1	0	0	0	0	1	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	a0010	712	1	0	0	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	a0011	245	1	0	0	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	a0012	510	1	0	0	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	a0013	712	1	1	0	0	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK1_chrX_154005507_154024902	0/0	a0014	230	1	0	0	1	0	0	copy fasta	IRAK1	chrX	154005507	154024902
IRAK2_chr3_10159919_10248745	0/0	a0001	625	148	49	19	62	3	15	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/1	a0002	625	75	20	24	15	4	11	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	1/0	a0003	625	25	5	10	1	3	5	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	a0004	625	12	11	1	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	a0005	625	7	0	0	7	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	a0006	625	5	0	2	0	2	1	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	a0007	625	5	0	3	0	0	2	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	a0008	625	5	0	0	2	0	3	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	a0009	625	3	3	0	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	a0010	625	3	0	1	1	0	1	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	a0011	625	1	0	1	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	a0012	625	1	0	1	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	a0013	625	1	1	0	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745
IRAK2_chr3_10159919_10248745	0/0	a0014	625	1	1	0	0	0	0	copy fasta	IRAK2	chr3	10159919	10248745