JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IRAK3_chr12_66184214_66259622	0/1	a0001	596	231	38	50	98	16	28	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	1/0	a0002	596	111	45	5	54	0	6	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	a0003	596	2	0	0	2	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	a0004	596	1	0	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	a0005	596	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK4_chr12_43753951_43794541	1/0	a0001	460	276	55	52	129	11	28	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/1	a0002	460	72	30	17	17	1	6	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	a0003	460	2	0	2	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	a0004	460	1	0	0	1	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	a0005	460	1	0	0	1	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	a0006	460	1	0	1	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	a0007	460	1	1	0	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IREB2_chr15_78433216_78506453	0/1	a0001	963	405	79	65	204	14	42	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	a0002	963	7	6	1	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	a0003	963	4	4	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	a0004	963	2	0	2	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	1/0	a0005	963	1	0	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	a0006	963	1	1	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IRF1_chr5_132476609_132495773	1/1	a0001	325	436	90	76	212	14	42	copy fasta	IRF1	chr5	132476609	132495773
IRF2BP1_chr19_45878608_45891141	1/1	a0001	584	382	92	71	160	16	41	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	a0002	584	17	1	1	15	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	a0003	578	7	0	3	3	0	1	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	a0004	578	5	0	0	5	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	a0005	584	2	0	0	0	0	2	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	a0006	578	1	0	0	1	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	a0007	578	1	0	1	0	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	a0008	584	1	1	0	0	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP2_chr1_234599269_234615178	0/1	a0001	587	195	62	33	69	13	17	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	1/0	a0002	587	189	17	36	115	1	19	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	a0003	588	21	13	3	1	0	4	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	a0004	587	8	0	4	0	2	2	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	a0005	587	3	0	1	0	2	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	a0006	587	1	0	1	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	a0007	587	1	0	0	1	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	a0008	587	1	1	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	a0009	587	1	1	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BPL_chr14_77019543_77033708	0/1	a0001	795	162	20	27	81	10	23	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	a0002	794	158	45	44	53	3	13	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	1/0	a0003	796	52	10	3	33	0	5	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	a0004	793	15	9	1	4	0	1	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	a0005	792	9	7	0	2	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	a0006	798	3	0	3	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	a0007	791	3	3	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	a0008	794	3	0	0	0	3	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	a0009	790	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	a0010	794	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	a0011	795	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	a0012	795	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	a0013	795	1	0	0	0	0	1	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	a0014	803	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708