Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AMBRA1_chr11_46391414_46599023	0/0	a0003	1298	1	1	0	0	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	a0004	1298	1	0	0	0	0	1	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	a0005	1298	1	0	0	0	0	1	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	a0006	1298	1	0	1	0	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMD1_chr6_110869785_110900713	1/1	a0001	334	393	76	64	189	14	48	copy fasta	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	a0002	334	1	0	0	1	0	0	copy fasta	AMD1	chr6	110869785	110900713
AMDHD1_chr12_95938331_95973720	0/1	a0001	426	305	56	45	167	11	25	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	1/0	a0002	426	90	36	23	9	6	15	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	a0003	426	2	2	0	0	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	a0004	426	2	0	0	0	1	1	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	a0005	426	1	1	0	0	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	a0006	426	1	0	0	1	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	a0007	426	1	0	0	1	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	a0008	426	1	0	0	0	0	1	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	a0009	426	1	1	0	0	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD2_chr16_2515371_2536417	1/1	a0001	409	315	86	64	124	5	34	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	a0002	409	2	2	0	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	a0003	409	1	0	0	0	1	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMELX_chrX_11288413_11305761	1/1	a0001	191	296	77	54	123	11	29	copy fasta	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	a0002	191	3	3	0	0	0	0	copy fasta	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	a0003	173	1	0	0	1	0	0	copy fasta	AMELX	chrX	11288413	11305761
AMELY_chrY_6860918_6916752	1/1	a0001	192	122	18	19	62	5	16	copy fasta	AMELY	chrY	6860918	6916752
AMELY_chrY_6860918_6916752	0/0	a0002	192	8	0	0	8	0	0	copy fasta	AMELY	chrY	6860918	6916752
AMELY_chrY_6860918_6916752	0/0	a0003	192	1	0	1	0	0	0	copy fasta	AMELY	chrY	6860918	6916752
AMER1_chrX_64180117_64210708	1/1	a0001	1135	187	29	40	84	9	23	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	a0002	1135	37	33	3	0	0	1	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	a0003	1135	8	0	0	8	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	a0004	1135	2	2	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	a0005	1135	2	2	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	a0006	1135	1	0	1	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	a0007	1135	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	a0008	1135	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	a0009	1135	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	a0010	1135	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	a0011	1135	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	a0012	985	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER2_chr13_25156679_25177288	1/1	a0001	671	373	73	68	173	14	43	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	a0002	671	33	15	6	11	0	1	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	a0003	678	3	0	0	3	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	a0004	678	2	2	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	a0005	671	1	1	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	a0006	671	1	0	0	1	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	a0007	671	1	0	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	a0008	671	1	0	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	a0009	105	1	1	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER3_chr2_130750540_130773134	0/1	a0001	861	259	53	47	109	13	36	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	a0002	861	53	0	22	21	5	5	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	a0003	861	15	0	0	14	0	1	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	a0004	861	11	10	1	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	a0005	861	5	5	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134