JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IRF2BPL_chr14_77019543_77033708	0/0	a0015	791	1	0	0	0	0	1	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	a0016	795	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	a0017	794	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2_chr4_184382729_184479550	1/1	a0001	349	375	90	76	155	14	38	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	a0002	349	1	0	0	1	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF3_chr19_49654572_49670857	1/0	a0001	427	191	27	40	92	7	24	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/1	a0002	427	191	59	35	69	5	22	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	a0003	427	10	9	1	0	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	a0004	427	3	0	3	0	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	a0005	427	2	0	0	2	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	a0006	427	1	0	1	0	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	a0007	427	1	1	0	0	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	a0008	427	1	0	0	1	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF4_chr6_386752_416443	1/1	a0001	451	447	82	78	227	16	42	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	a0002	451	12	10	2	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	a0003	451	1	0	0	1	0	0	copy fasta	IRF4	chr6	386752	416443
IRF5_chr7_128932927_128955038	0/1	a0001	504	206	57	32	91	6	19	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	1/0	a0002	514	196	37	41	84	10	23	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	a0003	504	1	0	0	1	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	a0004	514	1	0	1	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF6_chr1_209780617_209811142	1/1	a0001	467	342	92	55	132	18	43	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	a0002	467	85	0	15	67	0	3	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	a0003	467	1	0	0	1	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF7_chr11_607555_620950	0/0	a0001	503	300	39	44	161	11	45	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/1	a0002	503	100	55	30	6	5	3	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	a0003	503	3	2	1	0	0	0	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	a0004	503	2	1	1	0	0	0	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	a0005	503	1	0	0	1	0	0	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	a0006	503	1	1	0	0	0	0	copy fasta	IRF7	chr11	607555	620950
IRF8_chr16_85894162_85927606	1/1	a0001	426	429	98	66	210	16	37	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	a0002	426	1	0	0	1	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	a0003	426	1	0	0	0	0	1	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	a0004	426	1	0	0	1	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF9_chr14_24156265_24171565	1/1	a0001	393	434	96	69	203	18	46	copy fasta	IRF9	chr14	24156265	24171565
IRF9_chr14_24156265_24171565	0/0	a0002	393	2	2	0	0	0	0	copy fasta	IRF9	chr14	24156265	24171565
IRF9_chr14_24156265_24171565	0/0	a0003	239	1	0	0	1	0	0	copy fasta	IRF9	chr14	24156265	24171565
IRF9_chr14_24156265_24171565	0/0	a0004	393	1	0	1	0	0	0	copy fasta	IRF9	chr14	24156265	24171565
IRGC_chr19_43711076_43725021	1/1	a0001	463	370	90	65	153	18	42	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	a0002	463	34	3	3	26	0	2	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	a0003	463	3	3	0	0	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	a0004	463	2	2	0	0	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	a0005	463	1	0	1	0	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	a0006	463	1	0	1	0	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	a0007	463	1	0	0	1	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGM_chr5_150841521_150853702	1/1	a0001	181	338	87	71	129	12	37	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	a0002	181	52	1	7	41	0	3	copy fasta	IRGM	chr5	150841521	150853702
IRGQ_chr19_43579367_43601134	1/1	a0001	623	415	90	75	182	18	48	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	a0002	623	3	0	0	3	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	a0003	623	3	3	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	a0004	623	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134