JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IRGQ_chr19_43579367_43601134	0/0	a0005	623	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	a0006	623	1	0	1	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	a0007	590	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	a0008	623	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRS1_chr2_226726312_226804820	1/1	a0001	1242	249	71	47	99	6	24	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	a0002	1242	11	4	0	5	1	1	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	a0003	1242	5	0	0	5	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	a0004	1243	3	0	0	3	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	a0005	1242	2	0	0	2	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	a0006	1242	2	2	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	a0007	1242	1	0	0	1	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	a0008	1242	1	0	1	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	a0009	1242	1	0	0	0	0	1	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	a0010	1242	1	0	0	1	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	a0011	1242	1	0	0	0	1	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	a0012	1242	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS2_chr13_109747695_109791583	1/1	a0001	1338	261	74	39	114	8	24	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	a0002	1338	98	9	21	51	5	12	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	a0003	1323	15	2	2	7	0	4	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	a0004	1323	12	0	2	8	0	2	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	a0005	1338	6	6	0	0	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	a0006	1338	1	0	0	1	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	a0007	1338	1	0	0	0	0	1	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	a0008	1338	1	1	0	0	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	a0009	1338	1	0	0	0	1	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	a0010	1338	1	0	0	0	0	1	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	a0011	834	1	0	0	1	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS4_chrX_108714946_108741563	0/0	a0001	1256	147	24	21	91	0	11	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	1/1	a0002	1256	108	19	24	43	7	13	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	a0003	1256	14	14	0	0	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	a0004	1256	11	11	0	0	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	a0005	1256	9	0	3	0	2	4	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	a0006	1256	6	6	0	0	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	a0007	1256	6	1	0	4	0	1	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	a0008	1256	1	0	0	1	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	a0009	1256	1	1	0	0	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	a0010	1256	1	0	0	1	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	a0011	946	1	0	0	1	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	a0012	602	1	0	0	0	0	1	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	a0013	249	1	0	0	1	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	a0014	400	1	0	1	0	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRX1_chr5_3590832_3606403	1/1	a0001	480	447	92	86	203	16	48	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	a0002	480	3	3	0	0	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	a0003	480	1	0	0	1	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	a0004	480	1	0	0	1	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	a0005	480	1	0	0	1	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	a0006	480	1	1	0	0	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	a0007	480	1	0	0	1	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	a0008	480	1	0	0	1	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX2_chr5_2741165_2756677	0/0	a0000	0	1	0	0	1	0	0	copy fasta	IRX2	chr5	2741165	2756677