JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IRX2_chr5_2741165_2756677	1/1	a0001	471	385	89	72	178	13	31	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	a0002	471	41	1	5	14	3	18	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	a0003	471	2	2	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	a0004	471	1	0	1	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	a0005	471	1	0	0	1	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	a0006	471	1	0	0	1	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	a0007	471	1	0	0	0	0	1	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	a0008	471	1	1	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	a0009	471	1	1	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	a0010	471	1	0	0	1	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX3_chr16_54278304_54291787	0/1	a0001	501	326	64	57	157	10	37	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	a0002	501	46	22	11	1	6	6	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	1/0	a0003	501	11	10	0	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	a0004	501	2	0	0	1	0	1	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	a0005	501	1	0	0	1	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	a0006	501	1	0	1	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	a0007	501	1	0	1	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX4_chr5_1872413_1887925	1/0	a0001	519	383	75	63	186	16	42	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/1	a0002	519	42	20	13	3	2	3	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	a0003	519	2	2	0	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	a0004	519	2	0	0	2	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	a0005	519	1	0	0	1	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	a0006	519	1	1	0	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	a0007	519	1	0	0	1	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	a0008	519	1	0	0	1	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	a0009	519	1	1	0	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	a0010	519	1	1	0	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	a0011	519	1	0	0	0	0	1	copy fasta	IRX4	chr5	1872413	1887925
IRX5_chr16_54925865_54939485	1/1	a0001	483	211	58	38	82	10	21	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	a0002	483	135	18	26	73	3	15	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	a0003	454	17	2	3	9	0	3	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	a0004	454	16	3	6	2	0	5	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	a0005	483	7	6	0	0	1	0	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	a0006	483	3	3	0	0	0	0	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	a0007	483	1	0	1	0	0	0	copy fasta	IRX5	chr16	54925865	54939485
IRX6_chr16_55319203_55335756	1/1	a0001	446	368	88	77	138	16	47	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	a0002	446	40	0	0	40	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	a0003	446	18	0	1	17	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	a0004	446	4	4	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	a0005	446	4	0	0	3	0	1	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	a0006	446	2	0	0	2	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	a0007	446	2	2	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	a0008	446	2	2	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	a0009	446	1	1	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	a0010	446	1	0	0	1	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	a0011	446	1	0	0	1	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	a0012	149	1	0	0	1	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	a0013	446	1	0	1	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	a0014	446	1	0	0	1	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	a0015	446	1	1	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756