JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ITGA1_chr5_52782916_52964209	0/0	a0010	1179	1	0	0	1	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	a0011	1179	1	0	0	0	0	1	copy fasta	ITGA1	chr5	52782916	52964209
ITGA2B_chr17_44367181_44394649	1/0	a0001	1039	196	44	42	82	6	21	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/1	a0002	1039	146	42	21	60	6	16	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	a0003	1039	3	0	0	0	0	3	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	a0004	1039	1	0	0	1	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	a0005	1039	1	0	0	0	0	1	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	a0006	1039	1	0	1	0	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	a0007	1039	1	1	0	0	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	a0008	1039	1	0	1	0	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	a0009	1039	1	1	0	0	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	a0010	1039	1	0	0	1	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	a0011	1039	1	0	0	0	0	1	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	a0012	1039	1	0	1	0	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2_chr5_52984352_53099779	1/1	a0001	1181	330	74	64	144	13	33	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	a0002	1181	37	15	6	12	3	1	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	a0003	1181	10	0	0	10	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	a0004	1181	7	0	0	7	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	a0005	1181	3	0	3	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	a0006	1181	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	a0007	1181	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	a0008	1181	1	1	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	a0009	1181	1	1	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	a0010	1181	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	a0011	1181	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	a0012	1181	1	0	0	0	0	1	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	a0013	1181	1	1	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	a0014	1181	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	a0015	1181	1	0	0	0	0	1	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	a0016	1181	1	0	1	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA3_chr17_50051110_50095481	1/0	a0001	1051	302	82	61	114	17	27	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	a0002	1051	83	1	11	50	1	20	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	a0003	1051	5	0	0	5	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	a0004	1051	4	4	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/1	a0005	1051	1	0	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	a0006	1051	1	0	0	1	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	a0007	1051	1	0	0	1	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	a0008	1051	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	a0009	1051	1	0	1	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	a0010	1051	1	0	0	1	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	a0011	1051	1	0	1	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	a0012	1051	1	0	0	0	0	1	copy fasta	ITGA3	chr17	50051110	50095481
ITGA4_chr2_181452386_181543940	0/1	a0001	1032	274	58	48	139	8	20	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	1/0	a0002	1032	81	19	15	38	4	4	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	a0003	1032	9	9	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	a0004	1032	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	a0005	1032	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	a0006	1032	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	a0007	1032	1	0	1	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA5_chr12_54390261_54424266	1/1	a0001	1049	315	85	69	108	12	39	copy fasta	ITGA5	chr12	54390261	54424266