JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ITGA5_chr12_54390261_54424266	0/0	a0002	1049	3	3	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	a0003	1049	1	0	0	0	0	1	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	a0004	1049	1	0	0	1	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	a0005	1049	1	0	0	1	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	a0006	1049	1	1	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	a0007	1049	1	1	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	a0008	1049	1	1	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	a0009	1049	1	0	0	0	0	1	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	a0010	1049	1	0	0	1	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	a0011	1049	1	0	0	1	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	a0012	1049	1	1	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	a0013	1049	1	0	1	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	a0014	1049	1	0	0	0	0	1	copy fasta	ITGA5	chr12	54390261	54424266
ITGA6_chr2_172422586_172511459	1/1	a0001	1130	237	42	53	108	7	25	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	a0002	1130	80	29	15	19	7	10	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	a0003	1130	10	0	0	9	0	1	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	a0004	1130	9	9	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	a0005	1130	9	9	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	a0006	1130	7	1	2	0	0	4	copy fasta	ITGA6	chr2	172422586	172511459
ITGA7_chr12_55679568_55712904	0/1	a0001	1137	183	23	38	95	7	19	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	1/0	a0002	1137	122	58	30	15	8	10	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	a0003	1137	4	0	2	0	1	1	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	a0004	1137	3	3	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	a0005	1137	2	2	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	a0006	1137	2	2	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	a0007	1137	2	2	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	a0008	1137	1	0	0	0	0	1	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	a0009	1137	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	a0010	1137	1	0	0	0	0	1	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	a0011	1137	1	0	0	0	0	1	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	a0012	1137	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	a0013	1137	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	a0014	1137	1	0	0	1	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	a0015	1137	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	a0016	1137	1	0	0	0	0	1	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	a0017	1137	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	a0018	1137	1	0	0	1	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	a0019	1137	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA8_chr10_15508954_15724922	0/1	a0001	1063	152	55	32	43	6	15	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	1/0	a0002	1063	22	9	2	10	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	a0003	1063	11	2	0	9	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	a0004	1063	10	9	1	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	a0005	1063	5	1	4	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	a0006	1063	3	3	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	a0007	1063	3	2	1	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	a0008	1063	2	2	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	a0009	1063	2	0	0	0	0	2	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	a0010	1063	2	0	0	2	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	a0011	1063	1	0	0	1	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	a0012	1063	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922