JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ITGA8_chr10_15508954_15724922	0/0	a0013	1063	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	a0014	1063	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	a0015	593	1	0	0	0	0	1	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	a0016	1063	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	a0017	1063	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	a0018	1063	1	0	0	1	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA9_chr3_37447141_37828507	0/1	a0001	1035	87	23	19	37	2	5	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	1/0	a0002	1035	66	41	8	7	2	7	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	a0003	1035	4	3	1	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	a0004	1035	4	1	3	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	a0005	1035	1	0	0	0	0	1	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	a0006	1035	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	a0007	1035	1	0	1	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	a0008	1035	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	a0009	1035	1	0	0	0	0	1	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	a0010	1035	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	a0011	1035	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGAD_chr16_31388335_31431505	1/1	a0001	1161	357	85	55	167	15	33	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	a0002	1161	5	5	0	0	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	a0003	1161	3	3	0	0	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	a0004	1161	2	0	0	2	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	a0005	1161	2	2	0	0	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	a0006	1161	2	0	0	2	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	a0007	1161	1	1	0	0	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	a0008	1161	1	0	0	0	0	1	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	a0009	1161	1	0	1	0	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	a0010	1161	1	0	0	1	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	a0011	1161	1	0	0	0	1	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAE_chr17_3709628_3806188	0/1	a0001	1179	69	16	20	18	5	9	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0002	1179	48	0	4	28	0	16	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	1/0	a0003	1179	35	0	4	28	0	2	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0004	1179	33	22	8	0	2	1	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0005	1179	21	3	9	2	4	3	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0006	1179	15	4	0	10	0	1	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0007	1179	15	0	2	7	1	5	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0008	1179	13	7	0	5	1	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0009	1179	11	1	6	4	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0010	1179	5	0	3	1	0	1	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0011	1179	5	3	0	1	0	1	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0012	1179	4	0	0	4	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0013	1179	3	1	0	2	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0014	1179	3	3	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0015	1179	2	0	0	2	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0016	1179	2	2	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0017	1179	2	2	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0018	1179	2	2	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0019	1179	1	1	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0020	1179	1	0	0	0	1	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0021	1179	1	0	0	1	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0022	1179	1	0	0	0	0	1	copy fasta	ITGAE	chr17	3709628	3806188