JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ITGAE_chr17_3709628_3806188	0/0	a0023	1179	1	0	0	1	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0024	1179	1	0	1	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0025	1179	1	0	1	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0026	1179	1	1	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0027	1179	1	1	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0028	1179	1	1	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0029	1179	1	0	0	1	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0030	1179	1	1	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0031	1179	1	0	0	1	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	a0032	1179	1	1	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAL_chr16_30467742_30528185	1/1	a0001	1170	208	45	52	84	11	14	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	a0002	1170	92	34	15	19	5	19	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	a0003	1170	6	5	1	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	a0004	1170	2	2	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	a0005	1170	1	1	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	a0006	1170	1	1	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	a0007	1170	1	0	1	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	a0008	1170	1	0	0	1	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	a0009	1170	1	0	0	1	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	a0010	1170	1	0	0	1	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	a0011	1170	1	0	1	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	a0012	1170	1	0	1	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	a0013	1170	1	0	1	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	a0014	1170	1	0	0	0	0	1	copy fasta	ITGAL	chr16	30467742	30528185
ITGAM_chr16_31254975_31337877	1/1	a0001	1152	176	53	36	64	6	15	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	a0002	1152	24	10	4	2	0	8	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	a0003	1152	23	15	4	0	2	2	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	a0004	1152	14	5	7	0	2	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	a0005	1152	2	0	0	2	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	a0006	1152	1	1	0	0	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	a0007	1152	1	1	0	0	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	a0008	1152	1	0	0	0	0	1	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	a0009	1152	1	0	1	0	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	a0010	1152	1	1	0	0	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAV_chr2_186585056_186685901	0/1	a0001	1048	275	74	60	88	14	38	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	a0002	1048	23	7	6	10	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	1/0	a0003	1048	7	6	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	a0004	1048	1	1	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	a0005	1048	1	0	0	1	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	a0006	1048	1	0	0	1	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAX_chr16_31350176_31387999	1/0	a0001	1163	180	62	34	45	4	34	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/1	a0002	1163	118	2	27	80	3	5	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	a0003	1163	11	11	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	a0004	1163	8	2	2	0	1	3	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	a0005	1163	7	7	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	a0006	1163	5	0	3	0	2	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	a0007	1163	5	5	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	a0008	1163	3	3	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	a0009	1163	2	2	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	a0010	1163	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999