Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AMER3_chr2_130750540_130773134	0/0	a0006	861	3	0	0	3	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	a0007	861	2	0	0	2	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	1/0	a0008	861	2	0	1	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	a0009	861	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	a0010	861	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	a0011	861	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	a0012	861	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	a0013	861	1	0	1	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	a0014	861	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	a0015	861	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	a0016	861	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	a0017	861	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	a0018	861	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMFR_chr16_56356452_56430545	1/1	a0001	643	352	85	60	151	12	42	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	a0002	643	2	2	0	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	a0003	643	1	0	0	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	a0004	643	1	1	0	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMHR2_chr12_53418855_53436672	1/1	a0001	573	352	87	52	161	10	40	copy fasta	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	a0002	573	1	0	1	0	0	0	copy fasta	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	a0003	573	1	0	1	0	0	0	copy fasta	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	a0004	573	1	0	0	1	0	0	copy fasta	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	a0005	573	1	1	0	0	0	0	copy fasta	AMHR2	chr12	53418855	53436672
AMH_chr19_2244323_2257073	0/0	a0001	560	266	53	52	114	12	35	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	a0002	560	148	40	24	72	5	7	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	1/0	a0003	560	4	0	1	0	0	2	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/1	a0004	560	2	0	1	0	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	a0005	560	1	0	0	1	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	a0006	560	1	1	0	0	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	a0007	560	1	0	0	0	0	1	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	a0008	560	1	0	0	0	0	1	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	a0009	560	1	0	1	0	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	a0010	560	1	0	0	0	1	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	a0011	560	1	0	0	1	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	a0012	141	1	0	0	1	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	a0013	560	1	1	0	0	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	a0014	560	1	0	1	0	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	a0015	560	1	0	0	1	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	a0016	560	1	1	0	0	0	0	copy fasta	AMH	chr19	2244323	2257073
AMIGO1_chr1_109499178_109514727	1/1	a0001	493	396	98	59	180	14	43	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	a0002	493	3	2	0	0	0	1	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	a0003	500	1	0	1	0	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO2_chr12_47071447_47084959	1/1	a0001	522	468	99	75	229	18	45	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	a0002	522	8	0	0	8	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	a0003	522	1	1	0	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	a0004	522	1	0	1	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	a0005	522	1	0	0	0	0	1	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	a0006	522	1	0	0	1	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO3_chr3_49711829_49724684	1/1	a0001	504	322	84	67	120	18	31	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	a0002	504	4	4	0	0	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	a0003	504	1	0	0	1	0	0	copy fasta	AMIGO3	chr3	49711829	49724684