JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ITGAX_chr16_31350176_31387999	0/0	a0011	1163	1	1	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	a0012	1163	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	a0013	1163	1	1	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	a0014	1163	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	a0015	1163	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	a0016	1163	1	0	0	0	1	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	a0017	1163	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	a0018	1163	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	a0019	1163	1	0	0	0	1	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	a0020	1163	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGB1BP1_chr2_9398475_9428528	1/1	a0001	200	276	80	76	72	14	32	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP2_chrX_71296750_71310371	1/1	a0001	347	282	71	57	111	11	30	copy fasta	ITGB1BP2	chrX	71296750	71310371
ITGB1BP2_chrX_71296750_71310371	0/0	a0002	347	3	0	0	3	0	0	copy fasta	ITGB1BP2	chrX	71296750	71310371
ITGB1BP2_chrX_71296750_71310371	0/0	a0003	347	2	0	0	0	0	2	copy fasta	ITGB1BP2	chrX	71296750	71310371
ITGB1BP2_chrX_71296750_71310371	0/0	a0004	347	1	1	0	0	0	0	copy fasta	ITGB1BP2	chrX	71296750	71310371
ITGB1BP2_chrX_71296750_71310371	0/0	a0005	139	1	0	0	1	0	0	copy fasta	ITGB1BP2	chrX	71296750	71310371
ITGB1BP2_chrX_71296750_71310371	0/0	a0006	227	1	0	0	1	0	0	copy fasta	ITGB1BP2	chrX	71296750	71310371
ITGB1BP2_chrX_71296750_71310371	0/0	a0007	178	1	0	0	1	0	0	copy fasta	ITGB1BP2	chrX	71296750	71310371
ITGB1_chr10_32895318_32963230	1/1	a0001	798	423	90	66	203	16	46	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	a0002	798	1	0	0	1	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB2_chr21_44880953_44925899	1/1	a0001	769	433	92	84	191	18	46	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	a0002	769	2	2	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	a0003	769	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	a0004	769	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	a0005	769	1	0	0	1	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	a0006	769	1	0	0	1	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	a0007	769	1	0	0	0	0	1	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	a0008	769	1	0	0	0	0	1	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	a0009	769	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	a0010	769	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	a0011	769	1	0	0	1	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB3BP_chr1_63435770_63528225	1/1	a0001	177	371	89	66	174	8	32	copy fasta	ITGB3BP	chr1	63435770	63528225
ITGB3BP_chr1_63435770_63528225	0/0	a0002	177	2	0	2	0	0	0	copy fasta	ITGB3BP	chr1	63435770	63528225
ITGB3BP_chr1_63435770_63528225	0/0	a0003	140	1	1	0	0	0	0	copy fasta	ITGB3BP	chr1	63435770	63528225
ITGB3_chr17_47248827_47318743	1/1	a0001	788	334	67	56	168	11	30	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	a0002	788	22	11	5	0	1	5	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	a0003	788	6	0	0	6	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	a0004	788	2	2	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	a0005	788	1	0	1	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	a0006	788	1	1	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	a0007	788	1	0	0	1	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	a0008	788	1	0	0	1	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	a0009	788	1	1	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	a0010	788	1	0	0	0	0	1	copy fasta	ITGB3	chr17	47248827	47318743
ITGB4_chr17_75716459_75762818	0/1	a0001	1822	206	22	44	94	12	33	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	1/0	a0002	1822	144	54	19	55	4	11	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0003	1822	4	0	4	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0004	1822	3	3	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0005	1822	3	3	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	a0006	1822	3	3	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818