JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ITGB8_chr7_20325900_20420754	1/1	a0001	769	326	73	61	132	12	46	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	a0002	769	8	0	0	8	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	a0003	769	3	2	1	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	a0004	769	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	a0005	769	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	a0006	769	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	a0007	769	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	a0008	769	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGBL1_chr13_101447675_101721446	1/1	a0001	494	244	57	54	92	10	29	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	a0002	494	49	18	3	23	0	5	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	a0003	494	5	5	0	0	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	a0004	494	4	3	1	0	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	a0005	494	2	2	0	0	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	a0006	494	1	1	0	0	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	a0007	494	1	0	0	1	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITIH1_chr3_52772599_52797062	1/1	a0001	911	208	37	45	82	10	32	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	a0002	911	136	5	37	83	6	5	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	a0003	911	45	36	2	5	0	2	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	a0004	911	6	6	0	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	a0005	911	4	4	0	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	a0006	911	2	0	2	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	a0007	911	1	0	0	1	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	a0008	682	1	1	0	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	a0009	911	1	0	0	0	0	1	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	a0010	911	1	0	0	1	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	a0011	911	1	1	0	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH2_chr10_7698316_7754520	0/1	a0001	946	302	72	53	137	10	29	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	a0002	946	41	1	3	35	0	2	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	a0003	946	13	2	6	3	0	2	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	1/0	a0004	946	5	4	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	a0005	946	5	5	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	a0006	946	5	0	2	0	2	1	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	a0007	946	3	3	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	a0008	946	1	1	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	a0009	946	1	1	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	a0010	595	1	0	0	1	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	a0011	946	1	1	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	a0012	946	1	0	0	1	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	a0013	946	1	0	0	1	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH3_chr3_52789796_52813797	0/0	a0001	890	177	22	50	91	6	8	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	1/1	a0002	890	159	21	27	76	9	24	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0003	890	24	23	1	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0004	890	8	0	0	1	0	7	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0005	890	7	7	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0006	890	7	6	1	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0007	890	5	5	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0008	890	4	4	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0009	890	3	0	2	0	0	1	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0010	890	3	1	1	1	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0011	890	3	0	0	3	0	0	copy fasta	ITIH3	chr3	52789796	52813797