JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ITIH3_chr3_52789796_52813797	0/0	a0012	890	2	2	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0013	890	1	0	0	0	1	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0014	890	1	1	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0015	890	1	1	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0016	890	1	0	0	1	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0017	890	1	0	0	1	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0018	890	1	0	0	1	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0019	890	1	1	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0020	890	1	0	0	1	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0021	890	1	0	0	1	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0022	890	1	0	1	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0023	890	1	0	1	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	a0024	118	1	0	0	1	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH4_chr3_52807962_52835672	1/1	a0001	930	203	33	49	86	10	23	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	a0002	930	126	17	30	70	4	5	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	a0003	930	36	33	3	0	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	a0004	930	13	0	0	2	0	11	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	a0005	930	3	0	3	0	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	a0006	930	1	0	1	0	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	a0007	930	1	0	0	0	0	1	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	a0008	930	1	0	0	1	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	a0009	930	1	1	0	0	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	a0010	930	1	1	0	0	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	a0011	930	1	1	0	0	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	a0012	930	1	0	0	1	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	a0013	930	1	0	0	1	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	a0014	930	1	0	0	1	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH5_chr10_7554270_7671966	0/0	a0000	0	27	25	0	2	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0001	942	80	10	15	37	6	12	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/1	a0002	942	78	21	22	16	5	13	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0003	942	73	3	13	48	3	6	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	1/0	a0004	942	32	12	6	8	0	5	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0005	942	7	0	2	1	0	4	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0006	942	4	0	0	4	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0007	942	3	1	2	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0008	942	3	3	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0009	942	3	0	0	3	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0010	942	3	0	2	0	0	1	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0011	942	2	0	0	2	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0012	942	2	2	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0013	942	2	1	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0014	942	2	2	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0015	942	2	0	1	0	0	1	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0016	942	2	0	2	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0017	942	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0018	942	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0019	942	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0020	942	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0021	423	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0022	942	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966