JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ITIH5_chr10_7554270_7671966	0/0	a0023	942	1	0	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0024	942	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0025	942	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0026	942	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0027	942	1	0	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0028	942	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0029	942	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0030	942	1	0	0	0	0	1	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0031	942	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0032	942	1	0	0	0	0	1	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	a0033	942	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH6_chrX_54743918_54803255	1/1	a0001	1313	255	48	47	120	10	28	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	a0002	1313	14	12	2	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	a0003	1313	6	0	6	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	a0004	1313	4	0	0	4	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	a0005	1313	3	3	0	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	a0006	220	2	0	0	1	0	1	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	a0007	1313	2	2	0	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	a0008	1313	2	0	2	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	a0009	1313	1	1	0	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	a0010	1313	1	0	0	1	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	a0011	1313	1	0	1	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	a0012	1313	1	1	0	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	a0013	1313	1	0	0	0	0	1	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	a0014	1312	1	0	0	1	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	a0015	1313	1	1	0	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	a0016	1313	1	0	0	0	1	0	copy fasta	ITIH6	chrX	54743918	54803255
ITK_chr5_157175840_157260185	1/1	a0001	620	341	94	60	133	13	39	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	a0002	620	2	0	0	2	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	a0003	620	1	1	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	a0004	620	1	1	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	a0005	620	1	0	0	0	1	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	a0006	620	1	0	0	0	0	1	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	a0007	620	1	0	0	1	0	0	copy fasta	ITK	chr5	157175840	157260185
ITLN1_chr1_160871540_160890180	0/1	a0001	313	244	30	39	142	8	24	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	1/0	a0002	313	175	64	20	66	7	17	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	a0003	313	2	0	0	2	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	a0004	313	1	0	0	1	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	a0005	313	1	0	0	0	0	1	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	a0006	313	1	1	0	0	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	a0007	313	1	0	0	0	1	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	a0008	313	1	1	0	0	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	a0009	313	1	0	0	1	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	a0010	313	1	0	1	0	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN2_chr1_160940025_160959809	0/1	a0001	325	231	20	51	128	7	24	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	1/0	a0002	325	212	51	33	93	9	25	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	a0003	325	9	9	0	0	0	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	a0004	325	6	3	2	0	1	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	a0005	325	6	6	0	0	0	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	a0006	325	5	0	0	5	0	0	copy fasta	ITLN2	chr1	160940025	160959809