JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ITLN2_chr1_160940025_160959809	0/0	a0007	325	5	5	0	0	0	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	a0008	325	4	4	0	0	0	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	a0009	325	1	0	0	0	1	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	a0010	325	1	0	0	0	0	1	copy fasta	ITLN2	chr1	160940025	160959809
ITM2A_chrX_79355384_79372334	1/1	a0001	263	331	80	60	145	12	32	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	0/0	a0002	263	2	0	1	0	1	0	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	0/0	a0003	57	1	0	0	1	0	0	copy fasta	ITM2A	chrX	79355384	79372334
ITM2B_chr13_48228206_48275357	1/1	a0001	266	333	93	61	139	8	30	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	a0002	266	2	1	1	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	a0003	266	1	0	1	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	a0004	266	1	0	0	1	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	a0005	266	1	0	1	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2C_chr2_230859942_230884248	1/0	a0001	267	219	79	44	60	7	28	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/1	a0002	267	175	17	36	91	11	19	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	a0003	267	2	0	0	2	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	a0004	267	1	0	0	1	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	a0005	267	1	0	0	0	0	1	copy fasta	ITM2C	chr2	230859942	230884248
ITPA_chr20_3204498_3228860	1/1	a0001	194	373	86	71	154	16	44	copy fasta	ITPA	chr20	3204498	3228860
ITPA_chr20_3204498_3228860	0/0	a0002	194	40	2	3	31	2	2	copy fasta	ITPA	chr20	3204498	3228860
ITPA_chr20_3204498_3228860	0/0	a0003	194	1	0	0	1	0	0	copy fasta	ITPA	chr20	3204498	3228860
ITPK1_chr14_92931914_93120925	0/1	a0001	414	241	76	52	67	14	31	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	a0002	414	1	0	0	1	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	a0003	414	1	0	0	0	0	1	copy fasta	ITPK1	chr14	92931914	93120925
ITPKA_chr15_41488874_41508551	1/1	a0001	461	423	91	82	193	10	45	copy fasta	ITPKA	chr15	41488874	41508551
ITPKA_chr15_41488874_41508551	0/0	a0002	461	1	0	0	0	0	1	copy fasta	ITPKA	chr15	41488874	41508551
ITPKA_chr15_41488874_41508551	0/0	a0003	461	1	0	0	1	0	0	copy fasta	ITPKA	chr15	41488874	41508551
ITPKA_chr15_41488874_41508551	0/0	a0004	461	1	1	0	0	0	0	copy fasta	ITPKA	chr15	41488874	41508551
ITPKB_chr1_226626690_226744282	0/0	a0001	943	104	30	21	40	4	9	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	a0002	946	85	7	12	49	6	11	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/1	a0003	946	83	23	9	39	1	10	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	a0004	946	22	20	1	0	0	1	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	a0005	946	20	0	3	17	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	a0006	946	10	0	7	3	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	1/0	a0007	946	5	0	3	0	1	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	a0008	943	4	0	0	3	0	1	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	a0009	946	3	3	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	a0010	942	2	0	0	2	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	a0011	946	2	0	0	2	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	a0012	946	2	2	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	a0013	946	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	a0014	946	1	1	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	a0015	946	1	0	1	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	a0016	946	1	1	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	a0017	946	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	a0018	943	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	a0019	943	1	1	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	a0020	946	1	0	1	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKC_chr19_40712112_40745860	1/1	a0001	683	375	90	62	166	18	37	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	a0002	683	3	1	2	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	a0003	683	1	0	0	1	0	0	copy fasta	ITPKC	chr19	40712112	40745860