JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ITPKC_chr19_40712112_40745860	0/0	a0004	683	1	1	0	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	a0005	683	1	0	0	1	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	a0006	683	1	1	0	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	a0007	683	1	0	0	0	0	1	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	a0008	683	1	0	0	1	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	a0009	683	1	0	0	1	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	a0010	683	1	1	0	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	a0011	683	1	1	0	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	a0012	683	1	1	0	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPR1_chr3_4488348_4852506	1/1	a0001	2758	168	64	37	41	6	18	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	a0002	2758	2	0	0	2	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	a0003	2758	1	0	0	0	0	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	a0004	2758	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	a0005	2758	1	0	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	a0006	2758	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	a0007	2758	1	0	0	0	0	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	a0008	2758	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR2_chr12_26330352_26838194	1/1	a0001	2701	116	31	37	20	8	18	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	a0002	2701	11	10	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	a0003	2701	5	5	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	a0004	2701	2	2	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	a0005	2701	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	a0006	2701	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	a0007	2701	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	a0008	2701	1	0	0	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	a0009	2701	1	0	0	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	a0010	2701	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	a0011	2701	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	a0012	2701	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR3_chr6_33616322_33701562	0/0	a0001	2671	188	19	39	100	5	25	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	1/0	a0002	2671	117	56	24	28	5	3	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0003	2671	7	7	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/1	a0004	2671	6	0	3	0	2	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0005	2671	4	2	0	0	0	2	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0006	2671	2	0	0	2	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0007	2671	2	0	0	2	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0008	2671	2	2	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0009	2671	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0010	2671	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0011	2671	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0012	2671	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0013	2671	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0014	2671	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0015	2671	1	0	1	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0016	2671	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0017	2671	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0018	2671	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0019	2671	1	0	1	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0020	2671	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	a0021	2671	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562