JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ITPR3_chr6_33616322_33701562	0/0	a0022	2671	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPRID1_chr7_31509090_31661504	0/1	a0001	1044	102	14	21	48	6	12	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0002	1044	94	11	23	42	6	12	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0003	1044	37	10	10	9	2	6	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0004	1044	18	10	5	2	0	1	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0005	1044	9	7	2	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0006	1044	8	3	1	4	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0007	1044	5	5	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	1/0	a0008	1044	4	2	1	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0009	1044	4	2	0	2	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0010	1044	4	4	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0011	1044	4	4	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0012	1044	4	1	0	3	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0013	1044	3	3	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0014	1044	2	1	0	0	0	1	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0015	1044	2	0	0	2	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0016	1044	2	2	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0017	1044	1	0	0	1	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0018	1044	1	0	1	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0019	1044	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0020	1044	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0021	1044	1	0	0	1	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0022	189	1	0	0	1	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0023	1044	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0024	1044	1	0	0	1	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0025	1044	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	a0026	1044	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID2_chr2_181886730_181935738	1/1	a0001	1259	181	49	28	73	6	23	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	a0002	1259	48	8	2	31	0	7	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	a0003	1259	24	1	11	11	0	1	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	a0004	1259	17	16	1	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	a0005	1259	9	8	0	1	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	a0006	1259	2	2	0	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	a0007	1259	2	0	0	0	0	2	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	a0008	1259	1	1	0	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	a0009	1259	1	1	0	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	a0010	1259	1	0	1	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	a0011	1259	1	0	0	1	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	a0012	1259	1	1	0	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	a0013	1259	1	0	0	0	0	1	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	a0014	1259	1	0	1	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	a0015	1259	1	1	0	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	a0016	1259	1	0	0	1	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRIPL1_chr2_96320317_96333353	1/1	a0001	555	207	59	33	95	9	9	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	a0002	555	133	18	28	56	3	28	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	a0003	555	9	0	0	9	0	0	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	a0004	555	7	6	1	0	0	0	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	a0005	555	2	0	0	2	0	0	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	a0006	555	1	0	0	0	0	1	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	a0007	555	1	1	0	0	0	0	copy fasta	ITPRIPL1	chr2	96320317	96333353