JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ITPRIPL1_chr2_96320317_96333353	0/0	a0008	555	1	0	0	0	0	1	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	a0009	555	1	0	1	0	0	0	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	a0010	555	1	0	1	0	0	0	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	a0011	555	1	0	0	0	0	1	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL2_chr16_19108964_19126629	1/1	a0001	535	311	77	58	134	8	32	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	a0002	535	14	13	0	0	0	1	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	a0003	535	2	2	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	a0004	535	2	2	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	a0005	535	1	0	0	0	0	1	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIP_chr10_104304700_104343465	1/0	a0001	547	312	88	49	124	16	34	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	a0002	547	3	3	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	a0003	547	2	2	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	a0004	547	1	1	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	a0005	547	1	0	0	1	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	a0006	547	1	0	0	1	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	a0007	547	1	0	0	1	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	a0008	547	1	0	1	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	a0009	547	1	0	0	1	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/1	a0010	547	1	0	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITSN1_chr21_33637501_33904861	1/1	a0001	1721	221	66	41	76	7	29	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	a0002	1721	13	3	1	7	1	1	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	a0003	1721	3	3	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	a0004	1721	2	0	0	2	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	a0005	1721	1	0	0	1	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	a0006	1721	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	a0007	1721	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN2_chr2_24197864_24365536	1/1	a0001	1697	121	33	21	41	7	17	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	a0002	1697	32	31	1	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	a0003	1697	32	0	5	17	2	8	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	a0004	1697	25	4	7	8	3	3	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	a0005	1697	3	2	1	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	a0006	1697	2	0	0	2	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	a0007	1697	1	0	1	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	a0008	1697	1	1	0	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	a0009	1697	1	0	0	0	1	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	a0010	1697	1	0	0	0	1	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	a0011	1697	1	1	0	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	a0012	1697	1	0	0	1	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	a0013	1697	1	0	0	1	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	a0014	1697	1	0	0	1	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	a0015	1697	1	0	0	1	0	0	copy fasta	ITSN2	chr2	24197864	24365536
IVD_chr15_40400795_40426308	1/1	a0001	423	374	81	66	163	16	46	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	a0002	423	3	3	0	0	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	a0003	423	1	0	0	1	0	0	copy fasta	IVD	chr15	40400795	40426308
IVL_chr1_152903546_152916886	0/0	a0001	595	103	0	9	81	0	13	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	1/0	a0002	585	101	25	20	41	4	10	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/1	a0003	585	69	1	22	28	7	10	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0004	595	25	23	2	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0005	615	16	0	3	13	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0006	585	16	9	3	2	2	0	copy fasta	IVL	chr1	152903546	152916886