Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AMIGO3_chr3_49711829_49724684	0/0	a0004	504	1	1	0	0	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	a0005	504	1	0	0	1	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	a0006	504	1	1	0	0	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	a0007	504	1	0	1	0	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	a0008	504	1	0	0	1	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	a0009	504	1	0	0	0	0	1	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	a0010	504	1	0	0	1	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMMECR1L_chr2_127856630_127890956	1/1	a0001	310	332	92	68	121	11	38	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	a0002	310	1	0	0	0	1	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	a0003	310	1	0	0	1	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1_chrX_110189186_110323085	1/1	a0001	333	155	42	22	68	5	16	copy fasta	AMMECR1	chrX	110189186	110323085
AMN1_chr12_31666142_31734021	1/1	a0001	258	431	98	75	202	16	38	copy fasta	AMN1	chr12	31666142	31734021
AMN1_chr12_31666142_31734021	0/0	a0002	258	1	0	1	0	0	0	copy fasta	AMN1	chr12	31666142	31734021
AMN_chr14_102917663_102935842	1/1	a0001	453	443	96	79	201	18	47	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	a0002	455	4	2	2	0	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	a0003	453	2	0	0	2	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	a0004	453	1	0	0	0	0	1	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	a0005	453	1	0	0	1	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	a0006	453	1	0	1	0	0	0	copy fasta	AMN	chr14	102917663	102935842
AMOTL1_chr11_94763356_94881748	1/1	a0001	956	219	73	38	83	4	19	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	a0002	956	15	0	3	10	1	1	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	a0003	956	4	0	0	0	0	4	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	a0004	956	1	0	0	1	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	a0005	956	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	a0006	956	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	a0007	956	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	a0008	956	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	a0009	956	1	0	1	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	a0010	956	1	0	0	0	1	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	a0011	956	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL2_chr3_134350347_134379447	0/0	a0001	780	243	80	57	70	7	29	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	1/1	a0002	780	40	4	17	2	5	10	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	a0003	780	19	0	0	19	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	a0004	780	10	0	0	10	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	a0005	780	9	0	2	7	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	a0006	780	2	2	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	a0007	780	2	2	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	a0008	780	2	0	0	2	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	a0009	780	1	0	0	0	0	1	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	a0010	780	1	0	1	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	a0011	780	1	1	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	a0012	780	1	0	1	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	a0013	780	1	0	0	1	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	a0014	780	1	1	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	a0015	780	1	1	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	a0016	780	1	1	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	a0017	780	1	0	0	1	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOT_chrX_112769877_112845831	1/0	a0001	1084	256	75	37	118	5	20	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	a0002	1085	9	5	4	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/1	a0003	1075	3	0	2	0	0	0	copy fasta	AMOT	chrX	112769877	112845831