JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IWS1_chr2_127475812_127531489	0/0	a0007	819	1	0	0	1	0	0	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	a0008	819	1	1	0	0	0	0	copy fasta	IWS1	chr2	127475812	127531489
IYD_chr6_150364012_150410969	1/1	a0001	289	374	62	70	178	14	48	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	a0002	289	29	28	1	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	a0003	289	3	3	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	a0004	289	3	3	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	a0005	289	3	3	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	a0006	289	2	1	1	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IZUMO1R_chr11_94299580_94313146	1/1	a0001	250	407	68	77	196	18	46	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	a0002	250	27	21	1	3	0	2	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	a0003	250	15	0	0	15	0	0	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	a0004	250	8	8	0	0	0	0	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	a0005	250	1	1	0	0	0	0	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1_chr19_48735852_48751909	0/1	a0001	350	237	32	39	135	8	22	copy fasta	IZUMO1	chr19	48735852	48751909
IZUMO1_chr19_48735852_48751909	1/0	a0002	350	173	64	37	45	6	20	copy fasta	IZUMO1	chr19	48735852	48751909
IZUMO2_chr19_50147548_50168281	1/1	a0001	221	390	91	80	159	12	46	copy fasta	IZUMO2	chr19	50147548	50168281
IZUMO2_chr19_50147548_50168281	0/0	a0002	221	2	2	0	0	0	0	copy fasta	IZUMO2	chr19	50147548	50168281
IZUMO2_chr19_50147548_50168281	0/0	a0003	221	1	0	0	1	0	0	copy fasta	IZUMO2	chr19	50147548	50168281
IZUMO2_chr19_50147548_50168281	0/0	a0004	221	1	1	0	0	0	0	copy fasta	IZUMO2	chr19	50147548	50168281
IZUMO3_chr9_24537952_24550897	1/1	a0001	239	401	80	77	184	14	44	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	a0002	239	11	0	0	11	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	a0003	239	7	7	0	0	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	a0004	239	3	2	1	0	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	a0005	239	2	0	0	2	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	a0006	260	1	0	0	1	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	a0007	239	1	1	0	0	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO4_chr19_2091915_2104590	1/1	a0001	232	444	96	86	201	15	44	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	a0002	232	3	0	0	3	0	0	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	a0003	232	2	0	0	0	1	1	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	a0004	232	1	0	0	1	0	0	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	a0005	232	1	1	0	0	0	0	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	a0006	232	1	0	0	1	0	0	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	a0007	232	1	0	0	0	0	1	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	a0008	232	1	1	0	0	0	0	copy fasta	IZUMO4	chr19	2091915	2104590
JADE1_chr4_128804700_128880224	1/1	a0001	842	256	68	56	95	9	26	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	a0002	842	14	13	1	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	a0003	842	4	3	1	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	a0004	842	3	0	2	0	1	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	a0005	842	1	0	0	1	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE2_chr5_134520670_134588227	1/1	a0001	834	376	80	72	168	11	43	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	a0002	834	3	3	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	a0003	834	3	0	0	3	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	a0004	834	2	2	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	a0005	638	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	a0006	834	1	0	0	0	1	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	a0007	834	1	0	0	0	0	1	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	a0008	834	1	1	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE3_chrX_46907421_47066242	1/1	a0001	823	256	62	43	115	11	23	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	a0002	823	1	0	0	0	0	1	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	a0003	823	1	0	0	1	0	0	copy fasta	JADE3	chrX	46907421	47066242