JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
JAG1_chr20_10632684_10678999	1/1	a0001	1218	386	94	72	167	16	35	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	a0002	1218	15	1	3	6	0	5	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	a0003	1218	3	2	1	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	a0004	1218	2	0	2	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	a0005	1218	2	0	2	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	a0006	1218	1	0	0	0	0	1	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	a0007	1218	1	0	0	1	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	a0008	1218	1	0	0	0	0	1	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	a0009	1218	1	1	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG2_chr14_105135995_105173776	0/0	a0001	1238	162	66	30	50	5	11	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	1/0	a0002	1238	124	16	20	59	9	19	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/1	a0003	1238	46	0	13	26	0	6	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	a0004	1238	9	0	0	9	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	a0005	1238	8	8	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	a0006	1238	7	0	6	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	a0007	1238	1	1	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	a0008	1238	1	0	0	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	a0009	1238	1	1	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	a0010	1238	1	0	0	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	a0011	1238	1	0	0	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	a0012	1238	1	0	0	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	a0013	1238	1	0	1	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	a0014	1238	1	0	0	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAGN1_chr3_9885610_9899349	1/0	a0001	183	389	91	74	164	16	43	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/1	a0002	183	6	0	4	0	0	1	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	a0003	183	5	5	0	0	0	0	copy fasta	JAGN1	chr3	9885610	9899349
JAK1_chr1_64828229_64971549	0/0	a0000	0	1	0	0	0	0	1	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	1/1	a0001	1154	323	86	57	128	12	38	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	a0002	1154	1	0	1	0	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	a0003	1154	1	0	0	0	0	1	copy fasta	JAK1	chr1	64828229	64971549
JAK2_chr9_4980272_5134948	1/1	a0001	1132	356	85	73	152	8	36	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	a0002	1132	4	2	2	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	a0003	1132	1	0	0	1	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	a0004	1132	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	a0005	1132	1	0	0	1	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	a0006	1132	1	0	1	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK3_chr19_17819782_17852982	1/1	a0001	1124	395	88	74	166	18	47	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	a0002	1068	8	0	2	5	0	1	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	a0003	1124	6	6	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	a0004	1124	2	0	0	2	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	a0005	1124	1	1	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	a0006	1068	1	1	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	a0007	1124	1	0	0	1	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAKMIP1_chr4_6021199_6205549	1/0	a0001	831	231	80	41	70	14	25	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	a0002	831	1	0	0	0	0	1	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	a0003	831	1	0	1	0	0	0	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP2_chr5_147580438_147787728	1/1	a0001	820	237	58	42	109	10	16	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	a0002	820	11	0	0	11	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	a0003	820	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	a0004	820	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728