JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
JAKMIP3_chr10_132060946_132189858	0/0	a0001	859	46	22	5	13	0	6	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	1/1	a0002	846	39	16	11	2	3	5	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	a0003	846	32	1	5	20	2	4	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	a0004	496	31	8	4	13	1	5	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	a0005	846	6	0	5	0	1	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	a0006	496	1	1	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	a0007	846	1	0	0	0	1	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	a0008	859	1	0	0	1	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	a0009	496	1	0	0	1	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAM2_chr21_25634258_25722562	1/1	a0001	298	306	71	49	142	10	32	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	a0002	298	11	11	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	a0003	298	7	6	1	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	a0004	298	2	2	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	a0005	298	2	2	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM3_chr11_134064072_134157001	1/1	a0001	310	381	82	78	168	12	39	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	a0002	310	4	4	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	a0003	310	1	0	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	a0004	310	1	1	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	a0005	310	1	1	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	a0006	310	1	0	0	0	0	1	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	a0007	310	1	0	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAML_chr11_118188725_118230011	0/1	a0001	394	135	11	24	72	5	22	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	1/0	a0002	394	95	2	17	59	6	10	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	0/0	a0003	394	80	26	19	31	1	3	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	0/0	a0004	394	59	47	5	6	0	1	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	0/0	a0005	394	3	3	0	0	0	0	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	0/0	a0006	394	2	1	1	0	0	0	copy fasta	JAML	chr11	118188725	118230011
JARID2_chr6_15241069_15527042	1/1	a0001	1246	275	86	42	106	8	31	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	a0002	1246	3	3	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	a0003	1246	1	0	1	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	a0004	1246	1	0	1	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	a0005	1246	1	0	0	0	0	1	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	a0006	1246	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	a0007	1246	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	a0008	1246	1	1	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JAZF1_chr7_27825577_28185795	1/1	a0001	243	206	84	42	48	10	20	copy fasta	JAZF1	chr7	27825577	28185795
JCAD_chr10_30007803_30064586	1/0	a0001	1359	149	39	13	77	3	16	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/1	a0002	1359	113	27	22	54	5	4	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0003	1359	88	5	30	38	6	9	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0004	1359	7	6	1	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0005	1360	3	3	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0006	1359	3	0	2	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0007	1359	2	2	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0008	1359	2	0	0	2	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0009	1359	2	2	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0010	1359	2	0	2	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0011	1360	2	2	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0012	1359	2	0	0	2	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0013	1359	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0014	1359	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586