JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
JCAD_chr10_30007803_30064586	0/0	a0015	1359	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0016	1359	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0017	1359	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0018	1359	1	0	1	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0019	1359	1	0	0	0	0	1	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0020	1359	1	0	1	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0021	1359	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0022	1359	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0023	1359	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0024	1359	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0025	1360	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0026	1360	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0027	1359	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0028	1359	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0029	1359	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0030	1359	1	0	0	0	0	1	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0031	1359	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0032	1359	1	0	0	0	0	1	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0033	1359	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0034	1359	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	a0035	1359	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCHAIN_chr4_70650541_70671508	1/1	a0001	159	365	96	60	158	10	39	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	a0002	159	1	0	0	0	0	1	copy fasta	JCHAIN	chr4	70650541	70671508
JDP2_chr14_75423022_75479107	0/0	a0001	163	207	62	32	85	9	19	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	1/1	a0002	163	150	25	36	63	7	17	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	a0003	163	1	1	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JHY_chr11_122877759_122968862	1/1	a0001	778	313	81	43	133	14	40	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	a0002	778	5	5	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	a0003	778	4	0	0	4	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	a0004	778	4	3	1	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	a0005	778	2	2	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	a0006	778	1	0	0	1	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	a0007	778	1	0	0	1	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	a0008	778	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	a0009	778	1	0	0	1	0	0	copy fasta	JHY	chr11	122877759	122968862
JKAMP_chr14_59479517_59510410	1/1	a0001	311	356	93	76	135	14	36	copy fasta	JKAMP	chr14	59479517	59510410
JKAMP_chr14_59479517_59510410	0/0	a0002	311	1	1	0	0	0	0	copy fasta	JKAMP	chr14	59479517	59510410
JKAMP_chr14_59479517_59510410	0/0	a0003	311	1	0	0	1	0	0	copy fasta	JKAMP	chr14	59479517	59510410
JMJD1C_chr10_63162225_63470977	1/0	a0001	2540	116	34	23	45	2	11	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0002	2540	88	13	16	42	7	10	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0003	2538	34	0	5	27	1	1	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0004	2540	19	3	7	1	5	3	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/1	a0005	2540	11	6	3	0	1	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0006	2540	8	0	0	8	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0007	2539	8	7	1	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0008	2538	5	0	0	5	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0009	2540	3	0	0	3	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0010	2540	2	2	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0011	2538	2	0	0	2	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0012	2540	2	0	1	0	0	1	copy fasta	JMJD1C	chr10	63162225	63470977