JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
JMJD1C_chr10_63162225_63470977	0/0	a0013	2540	1	0	0	0	0	1	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0014	2538	1	0	0	1	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0015	2540	1	1	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0016	2540	1	0	1	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0017	2540	1	1	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0018	2540	1	0	0	0	0	1	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0019	2540	1	0	1	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0020	2540	1	1	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0021	2540	1	0	0	1	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0022	2540	1	0	0	1	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0023	2540	1	0	0	1	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	a0024	2540	1	0	0	1	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD4_chr1_227726191_227740302	1/1	a0001	417	250	42	38	128	9	31	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	a0002	417	82	38	14	17	3	10	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	a0003	417	80	1	23	47	3	6	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	a0004	417	11	11	0	0	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	a0005	417	3	0	1	0	2	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	a0006	417	2	0	2	0	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	a0007	417	2	0	1	0	1	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	a0008	417	1	0	0	0	0	1	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	a0009	417	1	0	0	1	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	a0010	417	1	1	0	0	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	a0011	417	1	1	0	0	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	a0012	417	1	0	0	1	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD4_chr1_227726191_227740302	0/0	a0013	417	1	0	1	0	0	0	copy fasta	JMJD4	chr1	227726191	227740302
JMJD6_chr17_76713451_76731606	1/1	a0001	403	440	98	78	204	14	44	copy fasta	JMJD6	chr17	76713451	76731606
JMJD7_chr15_41823092_41842581	1/1	a0001	316	357	81	71	143	14	46	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	a0002	316	8	7	1	0	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	a0003	316	4	3	0	0	1	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	a0004	316	3	0	0	3	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	a0005	316	3	0	0	3	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	a0006	316	2	0	0	0	0	2	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	a0007	316	2	0	2	0	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	a0008	316	1	0	1	0	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	a0009	316	1	0	0	1	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	a0010	316	1	0	0	1	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	a0011	316	1	0	0	0	1	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	a0012	316	1	0	0	1	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	a0013	316	1	1	0	0	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD7_chr15_41823092_41842581	0/0	a0014	316	1	0	1	0	0	0	copy fasta	JMJD7	chr15	41823092	41842581
JMJD8_chr16_676670_689334	1/1	a0001	264	337	82	60	135	12	46	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	a0002	264	11	10	1	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	a0003	264	6	0	0	6	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	a0004	103	2	0	0	2	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	a0005	264	2	0	0	2	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	a0006	264	2	2	0	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	a0007	264	2	2	0	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	a0008	264	1	0	0	1	0	0	copy fasta	JMJD8	chr16	676670	689334
JMJD8_chr16_676670_689334	0/0	a0009	264	1	0	1	0	0	0	copy fasta	JMJD8	chr16	676670	689334
JMY_chr5_79231131_79332211	0/1	a0001	988	129	23	23	56	9	17	copy fasta	JMY	chr5	79231131	79332211