JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
JMY_chr5_79231131_79332211	0/0	a0002	988	102	17	26	39	6	14	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	1/0	a0003	988	43	25	0	13	1	3	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	a0004	988	43	11	0	31	0	1	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	a0005	988	5	5	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	a0006	988	3	3	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	a0007	988	2	0	0	2	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	a0008	988	2	0	2	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	a0009	988	2	2	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	a0010	988	2	0	2	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	a0011	988	2	0	0	2	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	a0012	988	2	0	0	2	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	a0013	988	1	0	1	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	a0014	988	1	0	0	1	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	a0015	988	1	1	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	a0016	988	1	0	0	0	0	1	copy fasta	JMY	chr5	79231131	79332211
JMY_chr5_79231131_79332211	0/0	a0017	988	1	1	0	0	0	0	copy fasta	JMY	chr5	79231131	79332211
JOSD1_chr22_38680543_38705943	1/1	a0001	202	366	85	60	167	8	44	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	a0002	202	9	9	0	0	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD1_chr22_38680543_38705943	0/0	a0003	109	1	0	0	1	0	0	copy fasta	JOSD1	chr22	38680543	38705943
JOSD2_chr19_50500998_50516191	1/1	a0001	188	371	95	78	139	14	43	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	a0002	188	1	0	0	0	0	1	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	a0003	188	1	0	0	1	0	0	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	a0004	188	1	1	0	0	0	0	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	a0005	188	1	0	0	1	0	0	copy fasta	JOSD2	chr19	50500998	50516191
JOSD2_chr19_50500998_50516191	0/0	a0006	188	1	0	0	1	0	0	copy fasta	JOSD2	chr19	50500998	50516191
JPH1_chr8_74229700_74326540	1/1	a0001	661	295	69	50	134	12	28	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	a0002	661	13	9	4	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	a0003	661	11	9	2	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	a0004	661	3	0	0	3	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	a0005	661	2	1	1	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	a0006	661	2	1	0	1	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	a0007	661	1	0	1	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	a0008	661	1	1	0	0	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	a0009	661	1	0	0	1	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH1_chr8_74229700_74326540	0/0	a0010	661	1	0	0	1	0	0	copy fasta	JPH1	chr8	74229700	74326540
JPH2_chr20_44101590_44192188	1/1	a0001	696	219	44	47	82	13	31	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	a0002	696	103	29	10	54	2	8	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	a0003	696	8	8	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	a0004	696	3	2	0	0	0	1	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	a0005	696	1	0	1	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	a0006	696	1	0	0	1	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	a0007	696	1	0	0	1	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	a0008	696	1	0	0	0	1	0	copy fasta	JPH2	chr20	44101590	44192188
JPH2_chr20_44101590_44192188	0/0	a0009	696	1	1	0	0	0	0	copy fasta	JPH2	chr20	44101590	44192188
JPH3_chr16_87597508_87703156	1/1	a0001	748	363	89	73	140	14	45	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	a0002	748	5	0	0	5	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	a0003	748	2	2	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	a0004	748	1	1	0	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	a0005	748	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	a0006	748	1	0	0	0	0	1	copy fasta	JPH3	chr16	87597508	87703156