JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
JPH3_chr16_87597508_87703156	0/0	a0007	748	1	0	1	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	a0008	748	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	a0009	748	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	a0010	748	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	a0011	748	1	0	0	1	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	a0012	748	1	0	1	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH3_chr16_87597508_87703156	0/0	a0013	748	1	0	1	0	0	0	copy fasta	JPH3	chr16	87597508	87703156
JPH4_chr14_23563038_23583790	1/1	a0001	628	354	94	72	134	12	40	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	a0002	628	3	3	0	0	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	a0003	628	2	0	0	0	2	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	a0004	628	2	2	0	0	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	a0005	628	1	1	0	0	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	a0006	628	1	0	0	1	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPH4_chr14_23563038_23583790	0/0	a0007	628	1	0	0	1	0	0	copy fasta	JPH4	chr14	23563038	23583790
JPT1_chr17_75130248_75159512	1/1	a0001	154	386	94	73	160	17	40	copy fasta	JPT1	chr17	75130248	75159512
JPT1_chr17_75130248_75159512	0/0	a0002	154	1	0	0	0	1	0	copy fasta	JPT1	chr17	75130248	75159512
JPT1_chr17_75130248_75159512	0/0	a0003	154	1	0	1	0	0	0	copy fasta	JPT1	chr17	75130248	75159512
JPT2_chr16_1673279_1707086	1/1	a0001	190	386	86	62	186	12	38	copy fasta	JPT2	chr16	1673279	1707086
JRKL_chr11_96385013_96398561	1/1	a0001	524	428	92	74	202	16	42	copy fasta	JRKL	chr11	96385013	96398561
JRK_chr8_142652460_142674967	0/0	a0001	568	239	46	47	115	12	19	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	1/1	a0002	568	195	40	29	93	5	26	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	a0003	568	10	0	3	5	1	1	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	a0004	568	5	0	0	5	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	a0005	568	5	5	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	a0006	568	2	0	0	2	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	a0007	568	1	1	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	a0008	568	1	0	1	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	a0009	568	1	0	0	0	0	1	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	a0010	568	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	a0011	568	1	0	0	0	0	1	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	a0012	568	1	1	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	a0013	568	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	a0014	568	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	a0015	568	1	0	0	1	0	0	copy fasta	JRK	chr8	142652460	142674967
JRK_chr8_142652460_142674967	0/0	a0016	568	1	1	0	0	0	0	copy fasta	JRK	chr8	142652460	142674967
JSRP1_chr19_2247252_2261417	1/1	a0001	331	217	28	44	97	15	31	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	a0002	331	81	3	23	49	2	4	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	a0003	329	63	45	3	10	0	5	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	a0004	329	47	1	10	35	0	1	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	a0005	331	13	7	3	0	1	2	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	a0006	331	4	4	0	0	0	0	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	a0007	324	3	3	0	0	0	0	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	a0008	329	3	0	0	3	0	0	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	a0009	331	2	0	0	0	0	2	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	a0010	331	1	0	1	0	0	0	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	a0011	331	1	0	0	0	0	1	copy fasta	JSRP1	chr19	2247252	2261417
JSRP1_chr19_2247252_2261417	0/0	a0012	329	1	1	0	0	0	0	copy fasta	JSRP1	chr19	2247252	2261417
JTB_chr1_153969269_153982674	1/1	a0001	146	376	73	71	174	12	44	copy fasta	JTB	chr1	153969269	153982674
JTB_chr1_153969269_153982674	0/0	a0002	146	10	9	1	0	0	0	copy fasta	JTB	chr1	153969269	153982674
JUNB_chr19_12786486_12798315	1/1	a0001	347	362	94	66	140	16	44	copy fasta	JUNB	chr19	12786486	12798315