JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
JUND_chr19_18274694_18286622	1/1	a0001	347	398	81	73	183	16	43	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	a0002	344	4	2	1	1	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	a0003	347	2	0	0	2	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	a0004	347	1	0	0	1	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	a0005	347	1	0	0	1	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	a0006	347	1	1	0	0	0	0	copy fasta	JUND	chr19	18274694	18286622
JUND_chr19_18274694_18286622	0/0	a0007	347	1	0	0	0	0	1	copy fasta	JUND	chr19	18274694	18286622
JUN_chr1_58775791_58789047	1/1	a0001	331	439	93	82	196	18	48	copy fasta	JUN	chr1	58775791	58789047
JUN_chr1_58775791_58789047	0/0	a0002	331	1	1	0	0	0	0	copy fasta	JUN	chr1	58775791	58789047
JUP_chr17_41749609_41791711	0/0	a0001	745	212	54	37	78	10	33	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	a0002	745	189	37	33	105	5	9	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	a0003	745	3	0	0	0	1	2	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	a0004	745	1	0	0	1	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	a0005	745	1	0	1	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	a0006	772	1	0	0	1	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	a0007	745	1	1	0	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	a0008	745	1	0	1	0	0	0	copy fasta	JUP	chr17	41749609	41791711
JUP_chr17_41749609_41791711	0/0	a0009	745	1	0	0	1	0	0	copy fasta	JUP	chr17	41749609	41791711
KALRN_chr3_124028369_124731325	1/1	a0001	2986	104	46	22	26	6	2	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	a0002	2986	3	3	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	a0003	2986	3	0	0	3	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	a0004	2986	2	0	0	0	2	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	a0005	2986	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	a0006	2986	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	a0007	2986	1	1	0	0	0	0	copy fasta	KALRN	chr3	124028369	124731325
KALRN_chr3_124028369_124731325	0/0	a0008	2986	1	0	0	1	0	0	copy fasta	KALRN	chr3	124028369	124731325
KANK1_chr9_499695_751103	1/0	a0001	1352	86	1	20	49	5	10	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/1	a0002	1352	45	1	12	12	7	12	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0003	1352	23	0	4	19	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0004	1352	15	12	1	0	2	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0005	1352	11	0	7	0	1	3	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0006	1352	9	9	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0007	1352	7	7	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0008	1352	6	5	1	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0009	1352	6	5	1	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0010	1352	5	4	1	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0011	1352	4	4	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0012	1352	4	4	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0013	1352	4	0	0	4	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0014	1352	3	3	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0015	1352	3	3	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0016	1352	3	3	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0017	1352	2	1	1	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0018	1352	2	2	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0019	1352	2	0	0	2	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0020	1352	2	2	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0021	1352	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0022	1352	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0023	1352	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0024	1352	1	1	0	0	0	0	copy fasta	KANK1	chr9	499695	751103