JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KANK1_chr9_499695_751103	0/0	a0025	1352	1	0	0	0	0	1	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0026	1352	1	0	0	0	0	1	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0027	1352	1	0	0	1	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0028	1020	1	0	1	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0029	1352	1	0	0	0	1	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0030	1352	1	0	0	0	0	1	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0031	1352	1	0	0	1	0	0	copy fasta	KANK1	chr9	499695	751103
KANK1_chr9_499695_751103	0/0	a0032	1352	1	0	1	0	0	0	copy fasta	KANK1	chr9	499695	751103
KANK2_chr19_11159270_11202545	1/0	a0001	851	328	83	62	135	14	33	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0002	84	19	0	4	14	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0003	851	14	5	2	3	2	2	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0004	230	6	0	2	4	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0005	851	4	4	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0006	851	2	2	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0007	851	2	0	0	2	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0008	851	2	0	0	2	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0009	851	2	0	2	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0010	851	1	0	0	0	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0011	851	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0012	851	1	0	1	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0013	230	1	0	0	0	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0014	851	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0015	851	1	0	0	0	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0016	851	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0017	851	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0018	851	1	0	1	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0019	851	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/1	a0020	851	1	0	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0021	851	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0022	851	1	0	0	0	0	1	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0023	851	1	1	0	0	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK2_chr19_11159270_11202545	0/0	a0024	851	1	0	0	1	0	0	copy fasta	KANK2	chr19	11159270	11202545
KANK3_chr19_8317584_8348262	1/0	a0001	821	149	23	25	79	10	11	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	a0002	817	85	8	27	39	4	7	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	a0003	817	52	27	7	9	0	9	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	a0004	820	33	26	2	5	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/1	a0005	821	28	2	6	10	1	8	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	a0006	820	24	0	8	8	3	5	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	a0007	821	11	0	0	9	0	2	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	a0008	821	8	0	0	8	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	a0009	820	4	4	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	a0010	821	2	2	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	a0011	821	2	0	0	2	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	a0012	817	1	0	1	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	a0013	817	1	0	1	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	a0014	820	1	1	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	a0015	821	1	0	1	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	a0016	821	1	1	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	a0017	817	1	0	0	1	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK3_chr19_8317584_8348262	0/0	a0018	820	1	1	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262