JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KANK3_chr19_8317584_8348262	0/0	a0019	821	1	1	0	0	0	0	copy fasta	KANK3	chr19	8317584	8348262
KANK4_chr1_62231165_62324434	0/0	a0001	995	89	13	16	52	3	5	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/1	a0002	995	89	23	25	15	5	20	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0003	995	70	21	17	19	3	10	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0004	995	16	5	1	7	0	3	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0005	995	10	8	2	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0006	995	10	0	0	9	0	1	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0007	995	5	4	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0008	995	5	1	0	0	2	2	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0009	995	4	3	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0010	995	4	0	0	4	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0011	995	3	1	0	1	1	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0012	218	2	0	0	0	0	2	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0013	995	2	2	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0014	995	2	1	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	1/0	a0015	995	2	0	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0016	995	2	0	0	1	0	1	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0017	995	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0018	995	1	0	0	1	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0019	995	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0020	995	1	0	0	1	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0021	995	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0022	995	1	1	0	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANK4_chr1_62231165_62324434	0/0	a0023	995	1	0	1	0	0	0	copy fasta	KANK4	chr1	62231165	62324434
KANSL1L_chr2_210016421_210176409	1/1	a0001	987	272	69	46	115	12	28	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	a0002	987	5	5	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	a0003	987	2	0	0	2	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	a0004	987	2	1	1	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	a0005	987	1	0	0	1	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	a0006	987	1	0	1	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1L_chr2_210016421_210176409	0/0	a0007	987	1	1	0	0	0	0	copy fasta	KANSL1L	chr2	210016421	210176409
KANSL1_chr17_46024916_46198429	0/0	a0001	1105	213	70	28	99	5	11	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/1	a0002	1105	64	16	13	18	3	13	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	a0003	1105	22	3	8	1	4	6	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	a0004	1105	9	0	4	0	4	1	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	a0005	1105	3	0	0	3	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	a0006	1105	2	0	0	2	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	a0007	1105	2	2	0	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	a0008	1105	1	0	0	1	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	a0009	1105	1	0	0	1	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	a0010	1105	1	0	0	0	0	1	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	a0011	1105	1	0	1	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	a0012	1105	1	1	0	0	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL1_chr17_46024916_46198429	0/0	a0013	1105	1	0	0	1	0	0	copy fasta	KANSL1	chr17	46024916	46198429
KANSL2_chr12_48648211_48687238	0/0	a0001	492	161	30	36	65	9	21	copy fasta	KANSL2	chr12	48648211	48687238
KANSL2_chr12_48648211_48687238	1/1	a0002	492	156	62	26	47	4	15	copy fasta	KANSL2	chr12	48648211	48687238
KANSL2_chr12_48648211_48687238	0/0	a0003	492	4	0	3	0	1	0	copy fasta	KANSL2	chr12	48648211	48687238
KANSL2_chr12_48648211_48687238	0/0	a0004	492	1	0	1	0	0	0	copy fasta	KANSL2	chr12	48648211	48687238
KANSL3_chr2_96588172_96643312	1/1	a0001	878	276	78	48	113	10	25	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	a0002	878	47	1	0	41	0	5	copy fasta	KANSL3	chr2	96588172	96643312