Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AMOT_chrX_112769877_112845831	0/0	a0004	1084	1	0	0	1	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	a0005	1084	1	0	0	1	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMPD1_chr1_114668098_114700546	1/1	a0001	747	337	91	61	135	14	34	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	a0002	11	4	0	3	0	0	1	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	a0003	747	3	0	3	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	a0004	747	2	0	2	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	a0005	747	2	0	0	2	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	a0006	747	2	2	0	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	a0007	747	2	0	0	2	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	a0008	747	1	1	0	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	a0009	747	1	0	1	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	a0010	747	1	0	0	1	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	a0011	747	1	1	0	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	a0012	747	1	0	0	0	0	1	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	a0013	747	1	1	0	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD2_chr1_109614837_109637051	1/1	a0001	825	293	66	57	120	14	34	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	a0002	825	93	27	3	51	2	10	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	a0003	825	1	0	0	1	0	0	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	a0004	825	1	1	0	0	0	0	copy fasta	AMPD2	chr1	109614837	109637051
AMPD3_chr11_10450264_10512579	1/1	a0001	767	365	78	69	157	17	42	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	a0002	767	7	7	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	a0003	767	6	0	3	0	1	2	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	a0004	767	5	5	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	a0005	767	2	2	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	a0006	767	1	1	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	a0007	767	1	0	0	1	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	a0008	767	1	0	0	1	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	a0009	767	1	0	0	1	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	a0010	767	1	1	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPH_chr7_38378704_38636373	1/1	a0001	695	246	59	56	79	13	37	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	a0002	695	26	0	2	21	0	3	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	a0003	695	11	11	0	0	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	a0004	695	1	0	0	1	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	a0005	695	1	0	0	1	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	a0006	695	1	0	0	0	1	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	a0007	695	1	1	0	0	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMPH_chr7_38378704_38636373	0/0	a0008	695	1	1	0	0	0	0	copy fasta	AMPH	chr7	38378704	38636373
AMTN_chr4_70513569_70537743	1/1	a0001	209	314	82	62	129	11	28	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	a0002	209	67	2	7	44	3	11	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	a0003	209	58	0	5	47	1	5	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	a0004	209	8	6	1	0	0	1	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	a0005	209	3	2	1	0	0	0	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	a0006	209	2	0	0	2	0	0	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	a0007	209	2	0	0	0	1	1	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	a0008	209	1	0	1	0	0	0	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	a0009	209	1	0	1	0	0	0	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	a0010	209	1	1	0	0	0	0	copy fasta	AMTN	chr4	70513569	70537743
AMTN_chr4_70513569_70537743	0/0	a0011	209	1	1	0	0	0	0	copy fasta	AMTN	chr4	70513569	70537743
AMT_chr3_49411778_49427473	1/1	a0001	403	345	89	71	129	18	36	copy fasta	AMT	chr3	49411778	49427473
AMT_chr3_49411778_49427473	0/0	a0002	403	4	0	4	0	0	0	copy fasta	AMT	chr3	49411778	49427473