JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KAT6A_chr8_41924479_42056987	0/0	a0008	2004	1	0	1	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	a0009	2004	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	a0010	2004	1	0	0	0	0	1	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	a0011	2004	1	0	0	0	0	1	copy fasta	KAT6A	chr8	41924479	42056987
KAT6B_chr10_74821600_75037624	0/0	a0001	2072	122	44	18	39	1	20	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	1/1	a0002	2073	72	11	14	37	2	6	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	a0003	2072	24	8	4	11	1	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	a0004	2075	8	8	0	0	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	a0005	2072	2	2	0	0	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	a0006	2073	1	1	0	0	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	a0007	2072	1	0	0	0	0	1	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	a0008	2073	1	0	0	1	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	a0009	2072	1	1	0	0	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	a0010	2072	1	0	0	1	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	a0011	2072	1	0	0	1	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	a0012	2072	1	1	0	0	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	a0013	2072	1	0	0	0	0	1	copy fasta	KAT6B	chr10	74821600	75037624
KAT7_chr17_49783681_49840026	1/1	a0001	611	344	95	58	145	10	34	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	a0002	611	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	a0003	611	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT8_chr16_31112664_31136359	1/1	a0001	458	289	88	74	86	12	27	copy fasta	KAT8	chr16	31112664	31136359
KAT8_chr16_31112664_31136359	0/0	a0002	458	1	0	0	0	0	1	copy fasta	KAT8	chr16	31112664	31136359
KATNA1_chr6_149589873_149653714	0/0	a0001	491	293	82	53	100	16	42	copy fasta	KATNA1	chr6	149589873	149653714
KATNA1_chr6_149589873_149653714	0/0	a0002	491	2	1	1	0	0	0	copy fasta	KATNA1	chr6	149589873	149653714
KATNA1_chr6_149589873_149653714	0/0	a0003	491	1	1	0	0	0	0	copy fasta	KATNA1	chr6	149589873	149653714
KATNAL1_chr13_30197630_30312551	1/1	a0001	490	385	90	70	168	15	40	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	a0002	490	1	0	0	0	1	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNB1_chr16_57730770_57762244	1/1	a0001	655	375	67	68	178	18	42	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	a0002	655	14	14	0	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	a0003	655	12	12	0	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	a0004	655	1	1	0	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNBL1_chr15_34135674_34215096	1/1	a0001	304	338	84	58	148	12	34	copy fasta	KATNBL1	chr15	34135674	34215096
KATNBL1_chr15_34135674_34215096	0/0	a0002	304	6	6	0	0	0	0	copy fasta	KATNBL1	chr15	34135674	34215096
KATNIP_chr16_27545144_27785344	0/0	a0001	1618	87	53	9	21	3	1	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	a0002	1618	17	4	0	13	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	a0003	1618	13	1	6	0	4	2	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	a0004	1618	7	7	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	a0005	1618	5	0	1	4	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	a0006	1618	3	0	2	0	0	1	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	a0007	1618	3	3	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	a0008	1618	3	3	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	a0009	1618	2	0	2	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	a0010	1618	2	0	0	2	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	a0011	1618	2	2	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	a0012	1618	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	a0013	1618	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	a0014	1618	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	a0015	1618	1	0	0	0	1	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	1/0	a0016	1618	1	0	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/1	a0017	1618	1	0	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344