JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KATNIP_chr16_27545144_27785344	0/0	a0018	1618	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	a0019	1618	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KAZALD1_chr10_101056989_101072059	1/1	a0001	304	221	38	47	115	7	12	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	a0002	304	209	45	34	91	10	29	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	a0003	304	8	1	3	0	1	3	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	a0004	304	8	0	0	8	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	a0005	304	5	5	0	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	a0006	304	2	2	0	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	a0007	304	1	1	0	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZN_chr1_14593685_15123043	0/0	a0001	775	74	43	14	5	6	6	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	a0002	775	61	16	14	20	1	10	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	a0003	775	6	0	0	5	0	1	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	a0004	775	1	0	0	0	0	1	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	a0005	775	1	0	0	0	1	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	a0006	775	1	0	0	1	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	a0007	775	1	0	0	1	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	a0008	775	1	1	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KBTBD11_chr8_1968677_2011936	0/1	a0001	623	382	91	73	152	18	47	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	a0002	623	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	a0003	623	1	0	0	0	0	1	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	a0004	623	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	a0005	623	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	a0006	623	1	0	1	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	a0007	623	1	0	0	1	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	a0008	617	1	0	0	1	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD12_chr3_127910232_127992666	0/0	a0001	623	185	62	24	75	8	16	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	1/0	a0002	623	122	12	28	63	6	12	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/1	a0003	623	94	16	9	52	2	14	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	a0004	623	1	0	1	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD13_chr15_65071746_65084948	0/0	a0001	458	216	52	38	103	9	14	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	1/1	a0002	458	151	34	33	52	9	21	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	a0003	458	3	3	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	a0004	458	2	0	2	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	a0005	458	1	0	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	a0006	458	1	1	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	a0007	458	1	0	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	a0008	458	1	0	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	a0009	458	1	0	1	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	a0010	458	1	0	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	a0011	458	1	1	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	a0012	458	1	0	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	a0013	458	1	0	0	0	0	1	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	a0014	458	1	1	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD2_chr7_32863172_32896760	1/1	a0001	623	434	92	74	208	10	48	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD3_chr11_106046098_106082347	1/1	a0001	612	360	75	63	172	10	38	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	a0002	612	4	4	0	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	a0003	612	1	1	0	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	a0004	612	1	0	1	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD4_chr11_47567197_47583970	1/0	a0001	534	410	88	75	190	16	40	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD4_chr11_47567197_47583970	0/0	a0002	534	1	0	0	1	0	0	copy fasta	KBTBD4	chr11	47567197	47583970