JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KBTBD4_chr11_47567197_47583970	0/0	a0003	534	1	0	0	1	0	0	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD4_chr11_47567197_47583970	0/0	a0004	534	1	0	1	0	0	0	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD4_chr11_47567197_47583970	0/1	a0005	534	1	0	0	0	0	0	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD6_chr13_41122569_41137802	1/1	a0001	674	354	87	44	181	12	28	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	a0002	674	4	0	0	4	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	a0003	674	1	1	0	0	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	a0004	674	1	0	0	1	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD7_chr13_41184834_41199569	1/1	a0001	684	458	92	80	225	16	43	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	a0002	684	2	0	2	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	a0003	684	1	0	0	0	0	1	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	a0004	684	1	0	1	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	a0005	684	1	0	0	1	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	a0006	684	1	0	1	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD8_chr3_66993307_67016210	1/1	a0001	601	335	85	51	145	13	39	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	a0002	601	41	3	22	10	3	3	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	a0003	601	7	0	5	0	0	2	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	a0004	601	2	2	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	a0005	601	1	1	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	a0006	601	1	0	0	1	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	a0007	601	1	0	0	1	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	a0008	601	1	0	0	1	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	a0009	601	1	1	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KCMF1_chr2_84966161_85064472	1/1	a0001	381	274	74	44	112	10	32	copy fasta	KCMF1	chr2	84966161	85064472
KCNA10_chr1_110512217_110524175	1/1	a0001	511	386	72	78	178	16	40	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	a0002	511	33	1	3	25	0	4	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	a0003	511	8	7	1	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	a0004	511	6	0	0	6	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	a0005	511	4	4	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	a0006	511	4	4	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	a0007	511	2	2	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	a0008	511	1	1	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	a0009	511	1	1	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	a0010	511	1	1	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	a0011	511	1	1	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	a0012	511	1	0	0	1	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA1_chr12_4904905_4923256	1/1	a0001	495	450	98	76	212	16	46	copy fasta	KCNA1	chr12	4904905	4923256
KCNA2_chr1_110588580_110611358	1/1	a0001	499	438	92	70	214	14	46	copy fasta	KCNA2	chr1	110588580	110611358
KCNA3_chr1_110667465_110679940	1/1	a0001	575	429	91	70	210	16	40	copy fasta	KCNA3	chr1	110667465	110679940
KCNA3_chr1_110667465_110679940	0/0	a0002	580	1	0	1	0	0	0	copy fasta	KCNA3	chr1	110667465	110679940
KCNA3_chr1_110667465_110679940	0/0	a0003	575	1	0	1	0	0	0	copy fasta	KCNA3	chr1	110667465	110679940
KCNA3_chr1_110667465_110679940	0/0	a0004	575	1	1	0	0	0	0	copy fasta	KCNA3	chr1	110667465	110679940
KCNA4_chr11_30004730_30022030	1/1	a0001	653	389	87	70	168	16	46	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	a0002	653	3	3	0	0	0	0	copy fasta	KCNA4	chr11	30004730	30022030
KCNA5_chr12_5038879_5051788	1/0	a0001	613	431	86	79	204	15	46	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	a0002	613	6	6	0	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	a0003	613	4	1	2	0	1	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	a0004	613	1	1	0	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	a0005	613	1	1	0	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	a0006	613	1	0	0	1	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	a0007	613	1	0	1	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788