JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KCNA5_chr12_5038879_5051788	0/0	a0008	613	1	0	1	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	a0009	613	1	1	0	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	a0010	613	1	1	0	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	a0011	613	1	0	0	1	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	a0012	613	1	0	1	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/1	a0013	602	1	0	0	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	a0014	613	1	1	0	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA6_chr12_4804334_4818318	1/1	a0001	529	450	98	74	216	12	48	copy fasta	KCNA6	chr12	4804334	4818318
KCNA7_chr19_49062397_49077699	1/0	a0001	456	239	44	46	106	8	34	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/1	a0002	456	95	15	18	50	4	7	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	a0003	455	47	22	10	8	0	7	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	a0004	455	5	5	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	a0005	455	4	4	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	a0006	456	2	2	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	a0007	456	1	0	0	1	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	a0008	456	1	0	0	1	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	a0009	456	1	1	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	a0010	455	1	1	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNAB1_chr3_156115578_156543605	0/0	a0001	419	115	73	16	14	0	12	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	a0002	419	5	5	0	0	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	a0003	419	3	3	0	0	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	a0004	419	1	1	0	0	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB2_chr1_6040888_6106180	1/1	a0001	415	354	88	64	134	18	48	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	a0002	415	3	0	3	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	a0003	415	2	1	1	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	a0004	415	1	1	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB3_chr17_7916859_7934856	1/1	a0001	404	422	95	76	195	14	40	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	a0002	404	2	2	0	0	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	a0003	404	1	0	0	1	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	a0004	404	1	0	0	1	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	a0005	404	1	1	0	0	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	a0006	404	1	0	0	1	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNB1_chr20_49358877_49487668	1/1	a0001	858	273	83	44	90	12	42	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	a0002	858	2	0	2	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	a0003	858	1	0	1	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	a0004	858	1	0	1	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	a0005	858	1	1	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB2_chr8_72532225_72943349	0/0	a0001	911	160	61	32	36	6	25	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	a0002	911	2	0	0	0	0	2	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	a0003	911	1	0	0	0	0	1	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	a0004	911	1	1	0	0	0	0	copy fasta	KCNB2	chr8	72532225	72943349
KCNC1_chr11_17729781_17788057	1/1	a0001	585	331	95	60	116	18	40	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	a0002	585	1	1	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC2_chr12_75035078_75214839	1/1	a0001	638	315	88	42	141	10	32	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	a0002	638	1	0	0	1	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC3_chr19_50306937_50334377	0/1	a0001	757	341	81	76	125	16	42	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	a0002	654	13	2	3	7	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	a0003	757	11	10	1	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	1/0	a0004	757	2	0	0	0	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	a0005	757	2	1	0	0	0	1	copy fasta	KCNC3	chr19	50306937	50334377