JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KCNC3_chr19_50306937_50334377	0/0	a0006	757	2	1	1	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	a0007	757	1	0	0	0	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	a0008	757	1	0	1	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	a0009	757	1	0	0	0	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	a0010	757	1	0	0	1	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	a0011	757	1	0	0	0	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	a0012	757	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	a0013	757	1	0	0	1	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	a0014	654	1	0	0	1	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	a0015	757	1	0	0	1	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC4_chr1_110205314_110239044	1/1	a0001	626	370	77	64	167	15	45	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	a0002	626	36	12	3	18	2	1	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	a0003	626	15	4	4	7	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	a0004	626	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	a0005	626	1	0	0	1	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	a0006	626	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	a0007	626	1	0	0	0	0	1	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	a0008	626	1	0	1	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	a0009	626	1	0	0	0	1	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	a0010	626	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	a0011	626	1	0	0	1	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	a0012	626	1	0	0	0	0	1	copy fasta	KCNC4	chr1	110205314	110239044
KCND1_chrX_48956380_48976844	1/1	a0001	647	294	72	51	126	13	30	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	a0002	647	7	6	1	0	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	a0003	647	2	0	2	0	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	a0004	39	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	a0005	647	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	a0006	610	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND2_chr7_120268175_120755337	1/1	a0001	630	78	52	10	8	4	2	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	a0002	630	2	2	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND3_chr1_111765662_111994668	1/1	a0001	655	225	73	44	76	4	26	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	a0002	655	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCNE1_chr21_34441690_34517210	1/0	a0001	129	15	2	5	0	3	4	copy fasta	KCNE1	chr21	34441690	34517210
KCNE1_chr21_34441690_34517210	0/1	a0002	129	3	0	1	0	1	0	copy fasta	KCNE1	chr21	34441690	34517210
KCNE2_chr21_34359006_34376381	1/1	a0001	123	432	93	75	200	14	48	copy fasta	KCNE2	chr21	34359006	34376381
KCNE2_chr21_34359006_34376381	0/0	a0002	123	2	1	1	0	0	0	copy fasta	KCNE2	chr21	34359006	34376381
KCNE3_chr11_74449841_74472549	1/1	a0001	103	445	100	73	208	16	46	copy fasta	KCNE3	chr11	74449841	74472549
KCNE3_chr11_74449841_74472549	0/0	a0002	103	1	0	1	0	0	0	copy fasta	KCNE3	chr11	74449841	74472549
KCNE4_chr2_223047190_223060637	0/0	a0001	170	191	32	34	96	7	22	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	1/1	a0002	170	167	54	18	72	3	18	copy fasta	KCNE4	chr2	223047190	223060637
KCNE5_chrX_109618700_109630172	1/1	a0001	142	280	65	46	131	10	26	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	a0002	142	11	1	5	0	1	4	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	a0003	142	2	0	0	2	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	a0004	24	1	0	0	1	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	a0005	92	1	0	0	1	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNF1_chr2_10906934_10919225	1/1	a0001	494	436	98	78	196	18	44	copy fasta	KCNF1	chr2	10906934	10919225
KCNG1_chr20_50998656_51028107	1/1	a0001	513	422	97	73	188	16	46	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	a0002	513	1	1	0	0	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	a0003	513	1	0	1	0	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG2_chr18_79792938_79905100	1/0	a0001	466	212	69	38	71	9	24	copy fasta	KCNG2	chr18	79792938	79905100