JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KCNG2_chr18_79792938_79905100	0/0	a0002	467	91	9	18	44	7	13	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	a0003	466	4	0	0	4	0	0	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	a0004	462	2	0	0	2	0	0	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	a0005	466	1	0	0	1	0	0	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	a0006	466	1	0	0	0	0	1	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/1	a0007	466	1	0	0	0	0	0	copy fasta	KCNG2	chr18	79792938	79905100
KCNG3_chr2_42437017_42498982	1/1	a0001	436	342	88	72	126	16	38	copy fasta	KCNG3	chr2	42437017	42498982
KCNG4_chr16_84213657_84245012	1/0	a0001	519	219	35	44	109	7	23	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0002	519	45	11	10	13	4	7	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0003	519	41	2	7	31	0	1	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0004	519	30	8	7	13	0	2	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/1	a0005	519	28	7	4	7	3	6	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0006	519	18	0	4	9	2	3	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0007	519	17	9	5	2	1	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0008	519	13	0	0	12	0	1	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0009	519	13	2	0	7	0	4	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0010	519	6	6	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0011	519	5	5	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0012	522	5	0	0	5	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0013	522	3	3	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0014	519	2	1	1	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0015	519	2	0	0	2	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0016	519	2	0	0	2	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0017	522	2	1	0	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0018	519	2	2	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0019	519	2	0	2	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0020	519	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0021	519	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0022	519	1	0	1	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0023	519	1	0	0	0	0	1	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0024	519	1	0	0	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0025	519	1	0	0	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0026	519	1	0	0	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0027	519	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0028	519	1	0	1	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0029	519	1	0	0	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0030	519	1	0	0	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0031	519	1	0	0	0	0	1	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0032	519	1	0	0	0	0	1	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0033	519	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0034	519	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0035	519	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	a0036	522	1	0	0	0	1	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNH1_chr1_210673314_211139148	1/1	a0001	989	162	70	32	40	4	14	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	a0002	989	1	0	1	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	a0003	989	1	0	1	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH2_chr7_150939961_150983321	1/1	a0001	1159	319	87	53	132	12	33	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	a0002	1159	34	1	13	9	4	7	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	a0003	1159	1	1	0	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	a0004	1159	1	0	1	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321