JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KCNH2_chr7_150939961_150983321	0/0	a0005	1159	1	0	0	1	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	a0006	1159	1	1	0	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	a0007	1159	1	0	1	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH3_chr12_49534030_49563337	1/0	a0001	1083	223	73	37	71	11	30	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	a0002	1083	24	13	5	3	1	2	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/1	a0003	1083	13	0	7	0	1	4	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	a0004	1083	2	0	1	0	1	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	a0005	1083	1	1	0	0	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	a0006	1083	1	1	0	0	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH4_chr17_42151891_42186142	1/1	a0001	1017	316	90	55	128	7	34	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	a0002	1017	5	0	0	5	0	0	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	a0003	1017	1	0	0	1	0	0	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	a0004	1017	1	0	0	1	0	0	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	a0005	1017	1	0	0	0	1	0	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	a0006	1002	1	0	0	1	0	0	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	a0007	1017	1	0	1	0	0	0	copy fasta	KCNH4	chr17	42151891	42186142
KCNH5_chr14_62694464_63050458	1/1	a0001	988	181	48	33	83	8	7	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	a0002	988	40	15	9	13	0	3	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	a0003	988	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	a0004	988	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	a0005	988	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH6_chr17_63518358_63551727	1/0	a0001	958	250	54	54	109	10	22	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/1	a0002	958	41	13	4	9	6	8	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0003	958	7	7	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0004	958	5	5	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0005	958	3	0	3	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0006	958	3	3	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0007	958	2	2	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0008	958	1	0	0	0	0	1	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0009	958	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0010	958	1	1	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0011	958	1	1	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0012	958	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0013	958	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0014	958	1	0	0	0	0	1	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0015	958	1	1	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0016	958	1	0	1	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0017	958	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0018	958	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0019	958	1	0	0	1	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	a0020	958	1	1	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH7_chr2_162366407_162843767	1/1	a0001	1196	84	44	8	30	0	0	copy fasta	KCNH7	chr2	162366407	162843767
KCNH7_chr2_162366407_162843767	0/0	a0002	1196	13	11	2	0	0	0	copy fasta	KCNH7	chr2	162366407	162843767
KCNH7_chr2_162366407_162843767	0/0	a0003	1196	3	3	0	0	0	0	copy fasta	KCNH7	chr2	162366407	162843767
KCNH8_chr3_19143510_19540642	1/1	a0001	1107	121	49	22	29	6	13	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	a0002	1107	9	5	0	1	2	1	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	a0003	1107	2	2	0	0	0	0	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	a0004	1107	1	0	1	0	0	0	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	a0005	1107	1	0	1	0	0	0	copy fasta	KCNH8	chr3	19143510	19540642
KCNIP1_chr5_170499020_170741632	0/0	a0001	216	218	80	42	56	8	32	copy fasta	KCNIP1	chr5	170499020	170741632