JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KCNIP2_chr10_101820974_101848800	1/1	a0001	270	382	76	72	176	16	40	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP3_chr2_95292347_95391077	1/1	a0001	256	294	62	56	136	4	34	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	a0002	256	2	0	0	2	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	a0003	256	1	0	1	0	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	a0004	256	1	0	1	0	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP4_chr4_20723606_21953772	0/0	a0001	250	80	52	10	8	4	6	copy fasta	KCNIP4	chr4	20723606	21953772
KCNJ10_chr1_160032467_160075160	1/1	a0001	379	398	95	74	174	10	43	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	a0002	379	4	0	0	4	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	a0003	379	3	0	2	0	0	1	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	a0004	379	2	0	2	0	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	a0005	379	1	1	0	0	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ11_chr11_17380248_17393659	0/1	a0001	390	307	81	60	125	8	32	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	1/0	a0002	390	106	0	17	66	6	16	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	a0003	390	3	3	0	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	a0004	390	3	1	2	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	a0005	390	2	1	1	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	a0006	390	1	0	0	1	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ12_chr17_21371357_21424870	1/1	a0001	433	376	92	74	150	14	44	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ13_chr2_232760802_232781565	1/1	a0001	360	292	65	50	147	8	20	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	a0002	360	152	31	27	64	4	26	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	a0003	360	1	0	0	1	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	a0004	360	1	0	1	0	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ14_chr19_48450574_48471980	0/0	a0001	436	379	89	72	175	7	36	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	a0002	436	8	0	0	8	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	a0003	436	2	0	0	0	1	1	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	a0004	436	1	0	0	0	0	1	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	a0005	436	1	1	0	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	a0006	436	1	0	0	1	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ15_chr21_38251991_38312357	1/1	a0001	375	299	87	41	133	7	29	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	a0002	375	101	5	22	60	3	11	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	a0003	375	4	0	0	4	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	a0004	375	1	0	1	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	a0005	375	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ16_chr17_70070225_70140608	1/1	a0001	418	304	73	60	126	10	33	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	a0002	418	23	21	1	0	0	1	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	a0003	418	1	0	0	1	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	a0004	418	1	0	0	1	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	a0005	418	1	0	1	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ18_chr17_21687523_21709612	0/0	a0001	433	41	1	4	33	0	3	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	a0002	432	39	1	3	33	2	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	a0003	433	12	0	0	12	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/1	a0004	433	10	2	0	7	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	1/0	a0005	433	2	0	0	1	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	a0006	433	1	0	1	0	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	a0007	433	1	0	0	1	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	a0008	433	1	0	0	1	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	a0009	433	1	1	0	0	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	a0010	432	1	1	0	0	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	a0011	432	1	0	0	1	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	a0012	432	1	0	0	0	0	1	copy fasta	KCNJ18	chr17	21687523	21709612