JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KCNJ18_chr17_21687523_21709612	0/0	a0013	432	1	0	0	1	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ1_chr11_128833020_128872296	1/0	a0001	372	290	65	52	125	12	35	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	a0002	372	5	0	4	1	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	a0003	372	3	0	0	3	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	a0004	372	1	0	0	0	0	1	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	a0005	372	1	1	0	0	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	a0006	372	1	0	0	1	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ2_chr17_70164532_70185044	1/1	a0001	427	447	94	74	211	18	48	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	a0002	427	1	0	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ3_chr2_154693695_154863354	1/1	a0001	501	284	84	56	100	8	34	copy fasta	KCNJ3	chr2	154693695	154863354
KCNJ4_chr22_38421327_38460199	1/1	a0001	445	379	92	69	150	16	50	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ4_chr22_38421327_38460199	0/0	a0002	445	1	0	1	0	0	0	copy fasta	KCNJ4	chr22	38421327	38460199
KCNJ5_chr11_128886356_128926163	0/1	a0001	419	456	96	80	214	17	48	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	0/0	a0002	419	2	2	0	0	0	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ5_chr11_128886356_128926163	1/0	a0003	419	2	0	0	0	1	0	copy fasta	KCNJ5	chr11	128886356	128926163
KCNJ6_chr21_37602373_37921457	1/1	a0001	423	196	72	36	66	8	12	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ6_chr21_37602373_37921457	0/0	a0002	423	2	0	2	0	0	0	copy fasta	KCNJ6	chr21	37602373	37921457
KCNJ8_chr12_21759955_21779706	1/1	a0001	424	324	68	63	143	8	40	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	a0002	424	9	8	1	0	0	0	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ8_chr12_21759955_21779706	0/0	a0003	424	1	0	0	1	0	0	copy fasta	KCNJ8	chr12	21759955	21779706
KCNJ9_chr1_160076538_160095563	1/0	a0001	393	344	83	59	155	6	40	copy fasta	KCNJ9	chr1	160076538	160095563
KCNJ9_chr1_160076538_160095563	0/1	a0002	393	86	13	21	43	6	2	copy fasta	KCNJ9	chr1	160076538	160095563
KCNK10_chr14_88175108_88328269	1/1	a0001	543	313	85	53	133	9	31	copy fasta	KCNK10	chr14	88175108	88328269
KCNK10_chr14_88175108_88328269	0/0	a0002	543	21	1	13	1	1	5	copy fasta	KCNK10	chr14	88175108	88328269
KCNK12_chr2_47504290_47575985	1/1	a0001	430	387	90	61	178	12	44	copy fasta	KCNK12	chr2	47504290	47575985
KCNK12_chr2_47504290_47575985	0/0	a0002	430	1	0	1	0	0	0	copy fasta	KCNK12	chr2	47504290	47575985
KCNK13_chr14_90056994_90190853	1/0	a0001	408	234	46	56	93	9	29	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	a0002	408	41	10	4	21	2	4	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	a0003	408	26	22	2	0	0	2	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	a0004	408	5	5	0	0	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	a0005	408	3	2	1	0	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	a0006	408	2	2	0	0	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	a0007	408	2	0	1	0	1	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	a0008	408	2	2	0	0	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	a0009	408	1	0	0	0	0	1	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	a0010	408	1	0	0	1	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	a0011	408	1	1	0	0	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/0	a0012	408	1	0	0	1	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK13_chr14_90056994_90190853	0/1	a0013	408	1	0	0	0	0	0	copy fasta	KCNK13	chr14	90056994	90190853
KCNK15_chr20_44740865_44757313	0/1	a0001	330	168	45	26	75	6	15	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	1/0	a0002	330	160	21	38	74	4	22	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	a0003	330	61	6	4	46	1	4	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	a0004	330	10	10	0	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	a0005	330	10	7	3	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	a0006	330	4	4	0	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	a0007	367	3	0	0	0	1	2	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	a0008	330	1	0	1	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	a0009	330	1	0	1	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	a0010	330	1	1	0	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	a0011	330	1	0	0	0	0	1	copy fasta	KCNK15	chr20	44740865	44757313