JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KCNK15_chr20_44740865_44757313	0/0	a0012	330	1	0	1	0	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK15_chr20_44740865_44757313	0/0	a0013	330	1	0	0	1	0	0	copy fasta	KCNK15	chr20	44740865	44757313
KCNK16_chr6_39311171_39327702	0/1	a0001	294	239	86	38	82	8	24	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	1/0	a0002	294	212	10	40	127	8	26	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	a0003	294	2	0	0	2	0	0	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	a0004	294	1	0	0	1	0	0	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	a0005	294	1	1	0	0	0	0	copy fasta	KCNK16	chr6	39311171	39327702
KCNK16_chr6_39311171_39327702	0/0	a0006	294	1	1	0	0	0	0	copy fasta	KCNK16	chr6	39311171	39327702
KCNK17_chr6_39294001_39319419	0/1	a0001	332	220	79	32	77	7	24	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	1/0	a0002	332	217	12	46	122	10	26	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	a0003	332	4	4	0	0	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	a0004	332	4	0	0	4	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	a0005	332	2	2	0	0	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	a0006	332	2	0	2	0	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	a0007	332	1	0	0	1	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	a0008	332	1	0	0	0	1	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	a0009	332	1	0	0	1	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	a0010	332	1	0	0	1	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK17_chr6_39294001_39319419	0/0	a0011	332	1	1	0	0	0	0	copy fasta	KCNK17	chr6	39294001	39319419
KCNK18_chr10_117192489_117215299	1/1	a0001	384	329	74	60	148	14	31	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	a0002	384	45	10	5	23	0	7	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	a0003	384	37	0	5	26	2	4	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	a0004	384	9	9	0	0	0	0	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	a0005	384	3	3	0	0	0	0	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	a0006	384	2	0	0	2	0	0	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	a0007	384	1	0	0	1	0	0	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	a0008	384	1	1	0	0	0	0	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	a0009	384	1	1	0	0	0	0	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	a0010	384	1	0	0	0	0	1	copy fasta	KCNK18	chr10	117192489	117215299
KCNK18_chr10_117192489_117215299	0/0	a0011	384	1	0	0	0	0	1	copy fasta	KCNK18	chr10	117192489	117215299
KCNK1_chr1_233609106_233677514	1/1	a0001	336	418	96	76	181	14	49	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	a0002	336	1	0	0	1	0	0	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	a0003	336	1	1	0	0	0	0	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	a0004	336	1	0	0	0	0	1	copy fasta	KCNK1	chr1	233609106	233677514
KCNK1_chr1_233609106_233677514	0/0	a0005	336	1	1	0	0	0	0	copy fasta	KCNK1	chr1	233609106	233677514
KCNK2_chr1_215077737_215242090	1/1	a0001	426	260	62	40	114	8	34	copy fasta	KCNK2	chr1	215077737	215242090
KCNK3_chr2_26687722_26738420	1/1	a0001	394	336	90	70	126	16	32	copy fasta	KCNK3	chr2	26687722	26738420
KCNK4_chr11_64286302_64305031	1/1	a0001	393	268	73	49	99	13	32	copy fasta	KCNK4	chr11	64286302	64305031
KCNK4_chr11_64286302_64305031	0/0	a0002	393	134	23	25	75	3	8	copy fasta	KCNK4	chr11	64286302	64305031
KCNK4_chr11_64286302_64305031	0/0	a0003	393	1	0	0	1	0	0	copy fasta	KCNK4	chr11	64286302	64305031
KCNK4_chr11_64286302_64305031	0/0	a0004	393	1	0	0	1	0	0	copy fasta	KCNK4	chr11	64286302	64305031
KCNK4_chr11_64286302_64305031	0/0	a0005	393	1	0	1	0	0	0	copy fasta	KCNK4	chr11	64286302	64305031
KCNK4_chr11_64286302_64305031	0/0	a0006	393	1	0	1	0	0	0	copy fasta	KCNK4	chr11	64286302	64305031
KCNK5_chr6_39183971_39234475	1/1	a0001	499	400	80	76	181	15	46	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	a0002	499	12	11	1	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	a0003	499	3	3	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	a0004	499	1	0	0	1	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	a0005	499	1	0	1	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	a0006	499	1	1	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	a0007	499	1	0	0	1	0	0	copy fasta	KCNK5	chr6	39183971	39234475