JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KCNK5_chr6_39183971_39234475	0/0	a0008	499	1	0	1	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	a0009	499	1	0	0	0	1	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	a0010	499	1	0	1	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	a0011	499	1	1	0	0	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK5_chr6_39183971_39234475	0/0	a0012	499	1	0	0	1	0	0	copy fasta	KCNK5	chr6	39183971	39234475
KCNK6_chr19_38314845_38337076	1/1	a0001	313	313	71	54	147	15	24	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	a0002	313	57	5	12	23	1	16	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	a0003	313	20	0	9	11	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	a0004	313	2	0	0	0	0	2	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	a0005	313	1	0	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	a0006	313	1	0	0	1	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	a0007	313	1	0	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	a0008	313	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	a0009	313	1	0	1	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK6_chr19_38314845_38337076	0/0	a0010	313	1	1	0	0	0	0	copy fasta	KCNK6	chr19	38314845	38337076
KCNK7_chr11_65587836_65600800	1/1	a0001	307	405	92	71	174	18	48	copy fasta	KCNK7	chr11	65587836	65600800
KCNK7_chr11_65587836_65600800	0/0	a0002	307	8	0	0	8	0	0	copy fasta	KCNK7	chr11	65587836	65600800
KCNK7_chr11_65587836_65600800	0/0	a0003	307	8	6	1	1	0	0	copy fasta	KCNK7	chr11	65587836	65600800
KCNK7_chr11_65587836_65600800	0/0	a0004	307	1	0	0	1	0	0	copy fasta	KCNK7	chr11	65587836	65600800
KCNK7_chr11_65587836_65600800	0/0	a0005	307	1	1	0	0	0	0	copy fasta	KCNK7	chr11	65587836	65600800
KCNK7_chr11_65587836_65600800	0/0	a0006	307	1	1	0	0	0	0	copy fasta	KCNK7	chr11	65587836	65600800
KCNK9_chr8_139612121_139708123	1/1	a0001	374	322	86	62	134	4	34	copy fasta	KCNK9	chr8	139612121	139708123
KCNMA1_chr10_76879882_77642808	0/0	a0001	1236	103	48	19	22	4	10	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	a0002	1236	1	1	0	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	a0003	1236	1	0	1	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMA1_chr10_76879882_77642808	0/0	a0004	1236	1	1	0	0	0	0	copy fasta	KCNMA1	chr10	76879882	77642808
KCNMB1_chr5_170369671_170394367	1/1	a0001	191	302	66	52	141	11	30	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	a0002	191	61	17	9	25	4	6	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	a0003	191	57	7	14	27	3	6	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	a0004	191	8	8	0	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	a0005	191	1	0	1	0	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	a0006	191	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	a0007	191	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB1_chr5_170369671_170394367	0/0	a0008	191	1	0	0	1	0	0	copy fasta	KCNMB1	chr5	170369671	170394367
KCNMB2_chr3_178531436_178849429	0/0	a0001	235	232	78	46	72	12	24	copy fasta	KCNMB2	chr3	178531436	178849429
KCNMB3_chr3_179237771_179256114	1/0	a0001	275	214	28	44	114	6	21	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	a0002	275	79	33	17	12	4	13	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	a0003	254	34	21	11	0	1	1	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	a0004	275	11	0	0	5	0	6	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	a0005	275	10	0	4	6	0	0	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	a0006	275	8	2	0	3	0	3	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	a0007	275	6	3	2	0	1	0	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/1	a0008	275	5	0	2	0	2	0	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	a0009	275	2	2	0	0	0	0	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB3_chr3_179237771_179256114	0/0	a0010	275	1	1	0	0	0	0	copy fasta	KCNMB3	chr3	179237771	179256114
KCNMB4_chr12_70361290_70439292	1/1	a0001	210	378	96	72	164	10	34	copy fasta	KCNMB4	chr12	70361290	70439292
KCNN1_chr19_17962107_18005085	0/0	a0000	0	9	1	2	4	0	2	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	1/1	a0001	543	361	86	66	157	14	36	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	a0002	543	3	3	0	0	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	a0003	543	2	0	0	2	0	0	copy fasta	KCNN1	chr19	17962107	18005085