JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KCNN1_chr19_17962107_18005085	0/0	a0004	543	1	0	0	1	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	a0005	543	1	0	0	1	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN1_chr19_17962107_18005085	0/0	a0006	543	1	0	0	1	0	0	copy fasta	KCNN1	chr19	17962107	18005085
KCNN2_chr5_114357070_114501496	1/0	a0001	791	114	43	29	15	11	15	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/1	a0002	792	108	21	25	42	3	16	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	a0003	791	8	8	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	a0004	793	5	3	2	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	a0005	792	5	5	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	a0006	792	4	4	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	a0007	791	2	2	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	a0008	792	1	1	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	a0009	792	1	0	0	0	0	1	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	a0010	791	1	1	0	0	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN2_chr5_114357070_114501496	0/0	a0011	792	1	0	0	1	0	0	copy fasta	KCNN2	chr5	114357070	114501496
KCNN3_chr1_154692455_154875281	0/0	a0001	736	68	8	19	27	2	12	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	a0002	735	41	26	5	4	3	3	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	a0003	734	35	23	5	0	1	6	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/1	a0004	737	28	3	5	12	2	5	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	1/0	a0005	731	13	5	4	0	2	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	a0006	738	12	6	1	4	1	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	a0007	729	10	10	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	a0008	730	8	4	2	0	2	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	a0009	732	4	3	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	a0010	733	4	2	1	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	a0011	740	4	2	0	1	0	1	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	a0012	733	2	0	1	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	a0013	739	2	1	0	0	1	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	a0014	741	2	0	0	0	0	2	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	a0015	728	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	a0016	727	1	0	1	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	a0017	731	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	a0018	738	1	0	0	1	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN3_chr1_154692455_154875281	0/0	a0019	735	1	1	0	0	0	0	copy fasta	KCNN3	chr1	154692455	154875281
KCNN4_chr19_43761533_43785973	1/1	a0001	427	438	99	84	191	18	44	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	a0002	427	1	0	0	1	0	0	copy fasta	KCNN4	chr19	43761533	43785973
KCNN4_chr19_43761533_43785973	0/0	a0003	427	1	1	0	0	0	0	copy fasta	KCNN4	chr19	43761533	43785973
KCNQ1_chr11_2440008_2854105	1/1	a0001	676	191	82	46	33	8	20	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	a0002	676	5	0	0	5	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	a0003	679	4	4	0	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	a0004	676	2	2	0	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	a0005	676	2	0	0	2	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	a0006	676	1	1	0	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	a0007	676	1	1	0	0	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	a0008	676	1	0	0	1	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ1_chr11_2440008_2854105	0/0	a0009	676	1	0	0	1	0	0	copy fasta	KCNQ1	chr11	2440008	2854105
KCNQ2_chr20_63395208_63477655	0/0	a0001	872	186	47	33	64	11	31	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	1/1	a0002	872	136	40	37	41	5	11	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	a0003	872	5	0	0	5	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	a0004	872	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ2_chr20_63395208_63477655	0/0	a0005	872	1	0	0	1	0	0	copy fasta	KCNQ2	chr20	63395208	63477655