JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KCNQ2_chr20_63395208_63477655	0/0	a0006	872	1	1	0	0	0	0	copy fasta	KCNQ2	chr20	63395208	63477655
KCNQ3_chr8_132115861_132486095	0/0	a0001	872	155	72	25	30	1	27	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	a0002	872	18	0	3	13	1	1	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	a0003	872	2	2	0	0	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ3_chr8_132115861_132486095	0/0	a0004	872	1	0	0	1	0	0	copy fasta	KCNQ3	chr8	132115861	132486095
KCNQ4_chr1_40778787_40845452	1/1	a0001	695	343	85	64	133	16	43	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	a0002	695	19	0	7	5	2	5	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	a0003	695	4	0	0	4	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	a0004	695	1	0	1	0	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	a0005	695	1	0	0	1	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	a0006	695	1	0	0	1	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	a0007	695	1	0	0	1	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	a0008	695	1	1	0	0	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ4_chr1_40778787_40845452	0/0	a0009	695	1	0	0	1	0	0	copy fasta	KCNQ4	chr1	40778787	40845452
KCNQ5_chr6_72617064_73203853	0/0	a0001	932	79	48	10	20	0	1	copy fasta	KCNQ5	chr6	72617064	73203853
KCNQ5_chr6_72617064_73203853	0/0	a0002	932	1	0	0	0	0	1	copy fasta	KCNQ5	chr6	72617064	73203853
KCNRG_chr13_50010444_50025922	1/1	a0001	272	445	96	72	211	16	48	copy fasta	KCNRG	chr13	50010444	50025922
KCNRG_chr13_50010444_50025922	0/0	a0002	272	3	0	0	3	0	0	copy fasta	KCNRG	chr13	50010444	50025922
KCNS1_chr20_45086214_45106127	1/1	a0001	526	276	34	45	151	9	35	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	a0002	526	129	57	32	22	7	11	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	a0003	526	14	1	0	13	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	a0004	526	2	0	0	0	0	2	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	a0005	526	2	1	1	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	a0006	526	2	2	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS1_chr20_45086214_45106127	0/0	a0007	526	1	1	0	0	0	0	copy fasta	KCNS1	chr20	45086214	45106127
KCNS2_chr8_98421958_98437853	1/1	a0001	477	434	97	73	206	16	40	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	a0002	477	1	1	0	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS2_chr8_98421958_98437853	0/0	a0003	477	1	0	1	0	0	0	copy fasta	KCNS2	chr8	98421958	98437853
KCNS3_chr2_17873667_17937958	0/0	a0001	491	311	57	46	155	12	41	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	1/1	a0002	491	56	19	19	3	6	7	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	a0003	491	7	6	1	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	a0004	491	2	2	0	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	a0005	491	2	0	0	2	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	a0006	491	2	1	1	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	a0007	491	1	1	0	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	a0008	491	1	1	0	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	a0009	491	1	1	0	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNS3_chr2_17873667_17937958	0/0	a0010	491	1	0	1	0	0	0	copy fasta	KCNS3	chr2	17873667	17937958
KCNT1_chr9_135697185_135800502	1/1	a0001	1235	264	83	55	83	12	29	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	a0002	1235	2	0	2	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	a0003	1235	1	0	0	1	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	a0004	1235	1	1	0	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	a0005	1235	1	0	0	0	0	1	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	a0006	1235	1	0	1	0	0	0	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	a0007	1235	1	0	0	0	0	1	copy fasta	KCNT1	chr9	135697185	135800502
KCNT1_chr9_135697185_135800502	0/0	a0008	1235	1	0	0	0	0	1	copy fasta	KCNT1	chr9	135697185	135800502
KCNT2_chr1_196220779_196613440	1/1	a0001	1135	135	74	30	14	4	11	copy fasta	KCNT2	chr1	196220779	196613440
KCNT2_chr1_196220779_196613440	0/0	a0002	1135	1	0	0	0	0	1	copy fasta	KCNT2	chr1	196220779	196613440
KCNU1_chr8_36779374_36941125	0/1	a0001	1149	130	28	24	58	6	13	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	1/0	a0002	1149	95	23	17	46	3	5	copy fasta	KCNU1	chr8	36779374	36941125